Search Results - "Garbuzynskiy, Sergiy O"

FoldAmyloid: a method of prediction of amyloidogenic regions from protein sequence by Garbuzynskiy, Sergiy O., Lobanov, Michail Yu, Galzitskaya, Oxana V.

“…Motivation: Amyloidogenic regions in polypeptide chains are very important because such regions are responsible for amyloid formation and aggregation. It is…”
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Prediction of amyloidogenic and disordered regions in protein chains by Galzitskaya, Oxana V, Garbuzynskiy, Sergiy O, Lobanov, Michail Yurievich

“…The determination of factors that influence protein conformational changes is very important for the identification of potentially amyloidogenic and disordered…”
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Golden triangle for folding rates of globular proteins by Garbuzynskiy, Sergiy O., Ivankov, Dmitry N., Bogatyreva, Natalya S., Finkelstein, Alexei V.

“…The ability of protein chains to spontaneously form their spatial structures is a long-standing puzzle in molecular biology. Experimentally measured rates of…”
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Correction: Finkelstein et al. How Can Ice Emerge at 0 °C? Biomolecules 2022, 12 , 981 by Finkelstein, Alexei V, Garbuzynskiy, Sergiy O, Melnik, Bogdan S

“…We regret to state that our article "How Can Ice Emerge at 0 °C?" [...]…”
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Calculation of Crystal-Solution Dissociation Constants by Garbuzynskiy, Sergiy O, Finkelstein, Alexei V

“…The calculation of dissociation constants is an important problem in molecular biophysics. For such a calculation, it is important to correctly calculate both…”
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FoldUnfold: web server for the prediction of disordered regions in protein chain by Galzitskaya, Oxana V., Garbuzynskiy, Sergiy O., Lobanov, Michail Yu

“…Identification of disordered regions in polypeptide chains is very important because such regions are essential for protein function. A new parameter, namely…”
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How Can Ice Emerge at 0 °C? by Finkelstein, Alexei V, Garbuzynskiy, Sergiy O, Melnik, Bogdan S

“…The classical nucleation theory shows that bulk water freezing does not occur at temperatures above ≈ -30 °C, and that at higher temperatures ice nucleation…”
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Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis by Fong, Jessica H, Shoemaker, Benjamin A, Garbuzynskiy, Sergiy O, Lobanov, Michail Y, Galzitskaya, Oxana V, Panchenko, Anna R

“…We perform a large-scale study of intrinsically disordered regions in proteins and protein complexes using a non-redundant set of hundreds of different protein…”
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Physics of Ice Nucleation and Antinucleation: Action of Ice-Binding Proteins by Melnik, Bogdan S, Glukhova, Ksenia A, Sokolova Voronova, Evgeniya A, Balalaeva, Irina V, Garbuzynskiy, Sergiy O, Finkelstein, Alexei V

“…Ice-binding proteins are crucial for the adaptation of various organisms to low temperatures. Some of these, called antifreeze proteins, are usually thought to…”
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Contact order revisited: Influence of protein size on the folding rate by Ivankov, Dmitry N., Garbuzynskiy, Sergiy O., Alm, Eric, Plaxco, Kevin W., Baker, David, Finkelstein, Alexei V.

“…Guided by the recent success of empirical model predicting the folding rates of small two‐state folding proteins from the relative contact order (CO) of their…”
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Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms by Glyakina, Anna V., Garbuzynskiy, Sergiy O., Lobanov, Michail Yu, Galzitskaya, Oxana V.

“…Motivation: Understanding the basis of protein stability in thermophilic organisms raises a general question: what structural properties of proteins are…”
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Protein folding problem: enigma, paradox, solution by Finkelstein, Alexei V., Bogatyreva, Natalya S., Ivankov, Dmitry N., Garbuzynskiy, Sergiy O.

“…   The ability of protein chains to spontaneously form their three-dimensional structures is a long-standing mystery in molecular biology. The most conceptual…”
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Correction to “Sublimation Entropy and Dissociation Constants Prediction by Quantitative Evaluation of Molecular Mobility in Crystals” by Garbuzynskiy, Sergiy O, Finkelstein, Alexei V

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Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding by Savitski, Mikhail M., Kjeldsen, Frank, Nielsen, Michael L., Garbuzynskiy, Sergiy O., Galzitskaya, Oxana V., Surin, Alexey K., Zubarev, Roman A.

“…A strong correlation is found between the propensity of individual amino acids to induce peptide‐bond cleavage in the gas phase (PAA–XX) and their…”
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Sublimation Entropy and Dissociation Constants Prediction by Quantitative Evaluation of Molecular Mobility in Crystals by Garbuzynskiy, Sergiy O, Finkelstein, Alexei V

“…Prediction of binding free energies (or dissociation constants) is a crucial challenge for computational biochemistry. One of the main problems here consists…”
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Reduction of the Search Space for the Folding of Proteins at the Level of Formation and Assembly of Secondary Structures: A New View on the Solution of Levinthal's Paradox by Finkelstein, Alexei V, Garbuzynskiy, Sergiy O

“…The complete volume of the protein conformation space is, by many orders of magnitude, smaller at the level of secondary structure elements than that at the…”
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Clarification to “Protein folding problem: enigma, paradox, solution” by Finkelstein, Alexei V., Bogatyreva, Natalya S., Ivankov, Dmitry N., Garbuzynskiy, Sergiy O.

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Restrictions to protein folding determined by the protein size by Finkelstein, Alexei V., Bogatyreva, Natalya S., Garbuzynskiy, Sergiy O.

“…Experimentally measured rates of spontaneous folding of single-domain globular proteins range from microseconds to hours: the difference (11 orders of…”
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There and back again: Two views on the protein folding puzzle by Finkelstein, Alexei V., Badretdin, Azat J., Galzitskaya, Oxana V., Ivankov, Dmitry N., Bogatyreva, Natalya S., Garbuzynskiy, Sergiy O.

“…The ability of protein chains to spontaneously form their spatial structures is a long-standing puzzle in molecular biology. Experimentally measured folding…”
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Levinthal's question answered ... again? by Finkelstein, Alexei V., Garbuzynskiy, Sergiy O.

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