Search Results - "Garber, Maria B."

Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1 by Lomakin, Ivan B., Stolboushkina, Elena A., Vaidya, Anand T., Zhao, Chenguang, Garber, Maria B., Dmitriev, Sergey E., Steitz, Thomas A.

“…The repertoire of the density-regulated protein (DENR) and the malignant T cell-amplified sequence 1 (MCT-1/MCTS1) oncoprotein was recently expanded to include…”
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Protein L5 is crucial for in vivo assembly of the bacterial 50S ribosomal subunit central protuberance by Korepanov, Alexey P, Korobeinikova, Anna V, Shestakov, Sergey A, Garber, Maria B, Gongadze, George M

“…In the present work, ribosomes assembled in bacterial cells in the absence of essential ribosomal protein L5 were obtained. After arresting L5 synthesis,…”
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Structure and Function of Archaeal Translation Initiation Factor 2 Fragments Containing Cys2‑Cys2 Motifs by Nikonov, Oleg S., Nevskaya, Natalia A., Garber, Maria B., Nikonov, Stanislav V.

“…The heterotrimeric (αβγ) translation initiation factor 2 of archaea and eukaryotes (a/eIF2) supplies the P-site of the ribosome with the initiation tRNA. Its…”
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Four translation initiation pathways employed by the leaderless mRNA in eukaryotes by Akulich, Kseniya A., Andreev, Dmitry E., Terenin, Ilya M., Smirnova, Victoria V., Anisimova, Aleksandra S., Makeeva, Desislava S., Arkhipova, Valentina I., Stolboushkina, Elena A., Garber, Maria B., Prokofjeva, Maria M., Spirin, Pavel V., Prassolov, Vladimir S., Shatsky, Ivan N., Dmitriev, Sergey E.

“…mRNAs lacking 5′ untranslated regions (leaderless mRNAs) are molecular relics of an ancient translation initiation pathway. Nevertheless, they still represent…”
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Hydration shells of molecules in molecular association: A mechanism for biomolecular recognition by Lim, Valery I., Curran, James F., Garber, Maria B.

“…It has become clear that water should not be treated as an inert environment, but rather as an integral and active component of molecules. Here, we consider…”
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Archaeal Translation Initiation Factor aIF2 Can Substitute for Eukaryotic eIF2 in Ribosomal Scanning during Mammalian 48S Complex Formation by Dmitriev, Sergey E., Stolboushkina, Elena A., Terenin, Ilya M., Andreev, Dmitri E., Garber, Maria B., Shatsky, Ivan N.

“…Heterotrimeric translation initiation factor (IF) a/eIF2 ( archaeal/ eukaryotic IF 2) is present in both Eukarya and Archaea. Despite strong structural…”
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Studying the Properties of Domain I of the Ribosomal Protein L1: Incorporation into Ribosome and Regulation of the L1 Operon Expression by Korepanov, Alexey P., Kostareva, Olga S., Bazhenova, Maria V., Bubunenko, Mikhail G., Garber, Maria B., Tishchenko, Svetlana V.

“…L1 is a conserved protein of the large ribosomal subunit. This protein binds strongly to the specific region of the high molecular weight rRNA of the large…”
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30S ribosomal subunits can be assembled in vivo without primary binding ribosomal protein S15 by Bubunenko, Mikhail, Korepanov, Alexey, Court, Donald L, Jagannathan, Indu, Dickinson, Daniel, Chaudhuri, Biswajoy Roy, Garber, Maria B, Culver, Gloria M

“…Assembly of 30S ribosomal subunits from Escherichia coli has been dissected in detail using an in vitro system. Such studies have allowed characterization of…”
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Importance of the 5 S rRNA-binding Ribosomal Proteins for Cell Viability and Translation in Escherichia coli by Korepanov, Alexey P., Gongadze, George M., Garber, Maria B., Court, Donald L., Bubunenko, Mikhail G.

“…A specific complex of 5 S rRNA and several ribosomal proteins is an integral part of ribosomes in all living organisms. Here we studied the importance of…”
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Analysis of Recognition of Transfer-messenger RNA by the Ribosomal Decoding Center by Lim, Valery I., Garber, Maria B.

“…Bacterial ribosomes stalled on defective mRNAs are rescued by tmRNA that functions as both tRNA and mRNA. The first ribosomal elongation cycle on tmRNA where…”
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Ribosomal Elongation Cycle: Energetic, Kinetic and Stereochemical Aspects by Lim, Valery I., Curran, James F., Garber, Maria B.

“…As a preface to an analysis of the ribosomal elongation cycle, we examine the energetics of macromolecular structural transformations. We show that the kinetic…”
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The crucial role of conserved intermolecular H-bonds inaccessible to the solvent in formation and stabilization of the TL5.5 SrRNA complex by Gongadze, George M, Korepanov, Alexey P, Stolboushkina, Elena A, Zelinskaya, Natalia V, Korobeinikova, Anna V, Ruzanov, Maxim V, Eliseev, Boris D, Nikonov, Oleg S, Nikonov, Stanislav V, Garber, Maria B, Lim, Valery I

“…Analysis of the structures of two complexes of 5 S rRNA with homologous ribosomal proteins, Escherichia coli L25 and Thermus thermophilus TL5, revealed that…”
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NMR structure of the ribosomal protein L23 from Thermus thermophilus by Ohman, Anders, Rak, Alexey, Dontsova, Maria, Garber, Maria B, Härd, Torleif

“…The ribosomal protein L23 is a component of the large ribosomal subunit in which it is located close to the peptide exit tunnel. In this position L23 plays a…”
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The Crucial Role of Conserved Intermolecular H-bonds Inaccessible to the Solvent in Formation and Stabilization of the TL5·5 SrRNA Complex by Gongadze, George M., Korepanov, Alexey P., Stolboushkina, Elena A., Zelinskaya, Natalia V., Korobeinikova, Anna V., Ruzanov, Maxim V., Eliseev, Boris D., Nikonov, Oleg S., Nikonov, Stanislav V., Garber, Maria B., Lim, Valery I.

“…Analysis of the structures of two complexes of 5 S rRNA with homologous ribosomal proteins, Escherichia coli L25 and Thermus thermophilus TL5, revealed that…”
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The solution structure of ribosomal protein L18 from Thermus thermophilus reveals a conserved RNA-binding fold by Woestenenk, Esmeralda A, Gongadze, George M, Shcherbakov, Dmitry V, Rak, Alexey V, Garber, Maria B, Härd, Torleif, Berglund, Helena

“…We have determined the solution structure of ribosomal protein L18 from Thermus thermophilus. L18 is a 12.5 kDa protein of the large subunit of the ribosome…”
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Crystallization of Hfq protein: a bacterial gene-expression regulator by Vassilieva, Ioulia M., Nikulin, Alexey D., Blasi, Udo, Moll, Isabella, Garber, Maria B.

“…Hfq protein from Escherichia coli (EcoHfq) has been overproduced in E. coli, purified to homogeneity and crystallized using the hanging‐drop vapour‐diffusion…”
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Structure and Function of Archaeal Translation Initiation Factor 2 Fragments Containing Cys2âCys2 Motifs by Nikonov, Oleg S, Nevskaya, Natalia A, Garber, Maria B, Nikonov, Stanislav V

“…The heterotrimeric ([alpha][beta][gamma]) translation initiation factor 2 of archaea and eukaryotes (a/eIF2) supplies the P-site of the ribosome with the…”
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Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit by Allard, Peter, Rak, Alexey V, Wimberly, Brian T, Clemons, William M, Kalinin, Alexander, Helgstrand, Magnus, Garber, Maria B, Ramakrishnan, V, Härd, Torleif

“…Background: X-ray crystallography has recently yielded much-improved electron-density maps of the bacterial ribosome and its two subunits and many structural…”
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Preliminary investigation of the three-dimensional structure of Salmonella typhimurium uridine phosphorylase in the crystalline state by Molchan, Olga K., Zhang, Yang, Dontsova, Maria V., Lashkov, Alexandr A., Garber, Maria B., Gabdoulkhakov, Azat G., Mironov, Alexandr S., Morgunova, Ekaterina Yu, Zhukhlistova, Nadegda E., Voelter, Wolfgang, Betzel, Christian, Ealick, Steven E., Mikhailov, Al'bert M.

“…Uridine phosphorylase (UPh) catalyzes the phosphorolytic cleavage of the C—­N glycosidic bond of uridine to ribose 1‐phosphate and uracil in the…”
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Proteolytic fragmentation of polypeptide release factor 1 of Thermus thermophilus and crystallization of the stable fragments by Tin, Ouliana F., Rykunova, Anna I., Muranova, Tatiana A., Toyoda, Tomohiko, Itoa, Koichi, Suzuki, Tsutomu, Watanabe, Kimitsuna, Garber, Maria B., Nakamura, Yoshikazu

“…Polypeptide release factor one from Thermus thermophilus, ttRF1, was purified and subjected to crystallization. Thin crystalline needles were obtained but…”
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