Search Results - "Gao, Fangluan"

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies by Zhang, Dong, Gao, Fangluan, Jakovlić, Ivan, Zou, Hong, Zhang, Jin, Li, Wen X., Wang, Gui T.

“…Multigene and genomic data sets have become commonplace in the field of phylogenetics, but many existing tools are not designed for such data sets, which often…”
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EasyCodeML: A visual tool for analysis of selection using CodeML by Gao, Fangluan, Chen, Chengjie, Arab, Daej A., Du, Zhenguo, He, Yehua, Ho, Simon Y. W.

“…The genomic signatures of positive selection and evolutionary constraints can be detected by analyses of nucleotide sequences. One of the most widely used…”
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ggmsa: a visual exploration tool for multiple sequence alignment and associated data by Zhou, Lang, Feng, Tingze, Xu, Shuangbin, Gao, Fangluan, Lam, Tommy T, Wang, Qianwen, Wu, Tianzhi, Huang, Huina, Zhan, Li, Li, Lin, Guan, Yi, Dai, Zehan, Yu, Guangchuang

“…Abstract The identification of the conserved and variable regions in the multiple sequence alignment (MSA) is critical to accelerating the process of…”
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Using PhyloSuite for molecular phylogeny and tree‐based analyses by Xiang, Chuan‐Yu, Gao, Fangluan, Jakovlić, Ivan, Lei, Hong‐Peng, Hu, Ye, Zhang, Hong, Zou, Hong, Wang, Gui‐Tang, Zhang, Dong

“…Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced researchers, conquering the large number of software programs required…”
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Bayesian phylodynamic analysis reveals the dispersal patterns of tobacco mosaic virus in China by Gao, Fangluan, Liu, Xiaowei, Du, Zhenguo, Hou, Han, Wang, Xiaoyan, Wang, Fenglong, Yang, Jinguang

“…Tobacco mosaic virus (TMV) is widespread in China and causes considerable economic losses to tobacco production. The molecular epidemiology of this virus is,…”
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Correction: Histone H3 gene is not a suitable marker to distinguish Alternaria tenuissima from A. alternata affecting potato by Zhang, Yue, Tian, Peiyu, Duan, Guohua, Gao, Fangluan, Schnabel, Guido, Zhan, Jiasui, Chen, Fengping

“…[This corrects the article DOI: 10.1371/journal.pone.0231961.]…”
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Genomic analysis of the brassica pathogen turnip mosaic potyvirus reveals its spread along the former trade routes of the Silk Road by Kawakubo, Shusuke, Gao, Fangluan, Li, Shifang, Tan, Zhongyang, Huang, Ying-Kun, Adkar-Purushothama, Charith Raj, Gurikar, Chennappa, Maneechoat, Phoowanarth, Chiemsombat, Pissawan, San Aye, Seint, Furuya, Naruto, Shevchenko, Oleksiy, Špak, Josef, Škorić, Dijana, Ho, Simon Y. W., Ohshima, Kazusato

“…Plant pathogens have agricultural impacts on a global scale and resolving the timing and route of their spread can aid crop protection and inform control…”
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The Gene Flow Direction of Geographically Distinct Phytophthora infestans Populations in China Corresponds With the Route of Seed Potato Exchange by Gao, Fangluan, Chen, Changsheng, Li, Benjin, Weng, Qiyong, Chen, Qinghe

“…Phytophthora infestans is a widespread destructive plant pathogen that causes economic losses worldwide to potato production. In this study, we sequenced four…”
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Histone H3 gene is not a suitable marker to distinguish Alternaria tenuissima from A. alternata affecting potato by Zhang, Yue, Tian, Peiyu, Duan, Guohua, Gao, Fangluan, Schnabel, Guido, Zhan, Jiasui, Chen, Fengping

“…Potato Alternaria leaf blight is one of the economically most important disease in potato production worldwide. A recent study reported a quick method to…”
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Genomic Epidemiology and Evolution of Scallion Mosaic Potyvirus From Asymptomatic Wild Japanese Garlic by Ohshima, Kazusato, Kawakubo, Shusuke, Muraoka, Satoshi, Gao, Fangluan, Ishimaru, Kanji, Kayashima, Tomoko, Fukuda, Shinji

“…Scallion mosaic virus (ScaMV) belongs to the turnip mosaic virus phylogenetic group of potyvirus and is known to infect domestic scallion plants ( ) in China…”
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Bayesian Phylogeographic Inference Suggests Japan as the Center for the Origin and Dissemination of Rice Stripe Virus by Wu, Kangcheng, Yang, Yunyue, Zhang, Wenwen, Jiang, Xiaofeng, Zhuang, Weijian, Gao, Fangluan, Du, Zhenguo

“…Rice stripe virus (RSV) is one of the most important viral pathogens of rice in East Asia. The origin and dispersal of RSV remain poorly understood, but an…”
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Molecular Evolutionary Analysis of Potato Virus Y Infecting Potato Based on the VPg Gene by Mao, Yanzhi, Sun, Xuhong, Shen, Jianguo, Gao, Fangluan, Qiu, Guangwei, Wang, Teng, Nie, Xianzhou, Zhang, Wei, Gao, Yanling, Bai, Yanju

“…Potato virus Y (PVY) is an important plant pathogen infecting solanaceous crops, causing significant losses to global potato and tobacco production. Some…”
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The Occurrence and Genetic Variability of Tea Plant Necrotic Ring Blotch Virus in Fujian Province, China by Xihong Chen, Jianguo Shen, Min Li, Yujie Gao, Zhenguo Du, Fangluan Gao

“…Tea plant necrotic ring blotch virus (TPNRBV) is a kitavirus that poses a serious threat to the cultivation of tea, one of the most economically important…”
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A Putative Ormycovirus That Possibly Contributes to the Yellow Leaf Disease of Areca Palm by Xiaoqing Niu, Zhongtian Xu, Yujing Tian, Siyun Xiao, Yuan Xie, Zhenguo Du, Weiquan Qin, Fangluan Gao

“…Yellow leaf disease (YLD) poses a significant challenge to areca palm cultivation, yet its etiology remains uncertain. During our investigation of YLD-affected…”
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Association between virulence and triazole tolerance in the phytopathogenic fungus Mycosphaerella graminicola by Yang, Lina, Gao, Fangluan, Shang, Liping, Zhan, Jiasui, McDonald, Bruce A

“…Host resistance and synthetic antimicrobials such as fungicides are two of the main approaches used to control plant diseases in conventional agriculture…”
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Metabolites Produced by an Endophytic Phomopsis sp. and Their Anti-TMV Activity by Tan, Qing-Wei, Fang, Pei-Hua, Ni, Jian-Cheng, Gao, Fangluan, Chen, Qi-Jian

“…The fermentation and isolation of metabolites produced by an endophytic fungus, which was identified as sp. FJBR-11, based on phylogenetic analysis, led to the…”
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Genetic diversity and molecular evolution of Ornithogalum mosaic virus based on the coat protein gene sequence by Gao, Fangluan, Du, Zhenguo, Shen, Jianguo, Yang, Hongkai, Liao, Furong

“…(OrMV) has a wide host range and affects the production of a variety of ornamentals. In this study, the coat protein (CP) gene of OrMVwas used to investigate…”
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The evolutionary history and global spatio-temporal dynamics of potato virus Y by Gao, Fangluan, Kawakubo, Shusuke, Ho, Simon Y W, Ohshima, Kazusato

“…Abstract Potato virus Y (PVY) is a destructive plant pathogen that causes considerable losses to global potato and tobacco production. Although the molecular…”
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Molecular characterization of two recombinant isolates of telosma mosaic virus infecting Passiflora edulis from Fujian Province in China by Xie, Lixue, Gao, Fangluan, Shen, Jianguo, Zhang, Xiaoyan, Zheng, Shan, Zhang, Lijie, Li, Tao

“…Telosma mosaic virus (TeMV) is an important plant virus causing considerable economic losses to passion fruit ( ) production worldwide, including China. In…”
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A clade of telosma mosaic virus from Thailand is undergoing geographical expansion and genetic differentiation in passionfruit of Vietnam and China by Yu, Chaowei, Lian, Qin, Lin, Huihuang, Chen, Lei, Lu, Yizhong, Zhai, Yingying, Han, Xing, Du, Zhenguo, Gao, Fangluan, Wu, Zujian

“…Abstract Passionfruit ( Passiflora edulis ) is widely cultivated in tropical and subtropical regions around the world. Several viruses of the genus Potyvirus…”
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