Search Results - "Gangupomu, Vamshi"

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  1. 1
    Mapping Conformational Dynamics of Proteins Using Torsional Dynamics Simulations

    Mapping Conformational Dynamics of Proteins Using Torsional Dynamics Simulations by Gangupomu, Vamshi K., Wagner, Jeffrey R., Park, In-Hee, Jain, Abhinandan, Vaidehi, Nagarajan

    Published in Biophysical journal (07-05-2013)
    “…All-atom molecular dynamics simulations are widely used to study the flexibility of protein conformations. However, enhanced sampling techniques are required…”
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  2. 2
    Characterization of the water defect at the HIV-1 gp41 membrane spanning domain in bilayers with and without cholesterol using molecular simulations

    Characterization of the water defect at the HIV-1 gp41 membrane spanning domain in bilayers with and without cholesterol using molecular simulations by Baker, Michelle K., Gangupomu, Vamshi K., Abrams, Cameron F.

    Published in Biochimica et biophysica acta (01-05-2014)
    “…The membrane spanning domain (MSD) of human immunodeficiency virus 1 (HIV-1) envelope glycoprotein gp41 is important for fusion and infection. We used…”
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  3. 3
    All-Atom Models of the Membrane-Spanning Domain of HIV-1 gp41 from Metadynamics

    All-Atom Models of the Membrane-Spanning Domain of HIV-1 gp41 from Metadynamics by Gangupomu, Vamshi K., Abrams, Cameron F.

    Published in Biophysical journal (17-11-2010)
    “…The 27-residue membrane-spanning domain (MSD) of the HIV-1 glycoprotein gp41 bears conserved sequence elements crucial to the biological function of the virus,…”
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  4. 4
    Chimeric Cyanovirin-MPER Recombinantly Engineered Proteins Cause Cell-Free Virolysis of HIV-1

    Chimeric Cyanovirin-MPER Recombinantly Engineered Proteins Cause Cell-Free Virolysis of HIV-1 by CONTARINO, Mark, BASTIAN, Arangassery R, RAMALINGAM VENKAT KALYANA SUNDARAM, MCFADDEN, Karyn, DUFFY, Caitlin, GANGUPOMU, Vamshi, BAKER, Michelle, ABRAMS, Cameron, CHAIKEN, Irwin

    Published in Antimicrobial Agents and Chemotherapy (01-10-2013)
    “…Classifications Services AAC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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  5. 5
    Effects of the Midspan Arginine on the Interactions between a Solvated Lipid Bilayer and the HIV-1 Gp41 Membrane Spanning Domain

    Effects of the Midspan Arginine on the Interactions between a Solvated Lipid Bilayer and the HIV-1 Gp41 Membrane Spanning Domain by Baker, Michelle, Gangupomu, Vamshi, Abrams, Cameron

    Published in Biophysical journal (29-01-2013)
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  6. 6
    Structure Refinement of Protein Low Resolution Models Using the GNEIMO Constrained Dynamics Method

    Structure Refinement of Protein Low Resolution Models Using the GNEIMO Constrained Dynamics Method by Park, In-Hee, Gangupomu, Vamshi, Wagner, Jeffrey, Jain, Abhinandan, Vaidehi, Nagarajan

    Published in The journal of physical chemistry. B (01-03-2012)
    “…The challenge in protein structure prediction using homology modeling is the lack of reliable methods to refine the low resolution homology models…”
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  7. 7
    Chimeric Cyanovirin-MPER Recombinantly Engineered Proteins Cause Cell-Free Virolysis of HIV-1

    Chimeric Cyanovirin-MPER Recombinantly Engineered Proteins Cause Cell-Free Virolysis of HIV-1 by Contarino, Mark, Bastian, Arangassery R, Sundaram, Ramalingam Venkat Kalyana, McFadden, Karyn, Duffy, Caitlin, Gangupomu, Vamshi, Baker, Michelle, Abrams, Cameron, Chaiken, Irwin

    Published in Antimicrobial agents and chemotherapy (01-07-2014)
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  8. 8
    Structure Refinement of Protein Low Resolution Models using GNEIMO Constrained Dynamics Method

    Structure Refinement of Protein Low Resolution Models using GNEIMO Constrained Dynamics Method by Park, In-Hee, Gangupomu, Vamshi, Wagner, Jeffrey, Jain, Abhinandan, Vaidehi, Nagarajan

    Published in Biophysical journal (31-01-2012)
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  9. 9
    Molecular Simulations of HIV-1 gp41 protein-membrane interactions

    Molecular Simulations of HIV-1 gp41 protein-membrane interactions by Gangupomu, Vamshi K

    Published 01-01-2010
    “…Cellular and viral membrane fusion is a critical process during viral infection. The HIV-1 surface envelope glycoprotein (gp41) anchored in the…”
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  10. 10
    Molecular Simulations of HIV-1 gp41 protein-membrane interactions

    Molecular Simulations of HIV-1 gp41 protein-membrane interactions by Gangupomu, Vamshi K

    “…Cellular and viral membrane fusion is a critical process during viral infection. The HIV-1 surface envelope glycoprotein (gp41) anchored in the…”
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