Search Results - "Ganguly, Diep"

The covalent nucleotide modifications within plant mRNAs: What we know, how we find them, and what should be done in the future by Prall, Wil, Ganguly, Diep R, Gregory, Brian D

“…Abstract Although covalent nucleotide modifications were first identified on the bases of transfer RNAs (tRNAs) and ribosomal RNAs (rRNAs), a number of these…”
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The Arabidopsis DNA Methylome Is Stable under Transgenerational Drought Stress by Ganguly, Diep R., Crisp, Peter A., Eichten, Steven R., Pogson, Barry J.

“…Improving the responsiveness, acclimation, and memory of plants to abiotic stress holds substantive potential for improving agriculture. An unresolved question…”
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mRNA ADENOSINE METHYLASE promotes drought tolerance through N 6 -methyladenosine-dependent and independent impacts on mRNA regulation in Arabidopsis by Ganguly, Diep R, Li, Yongfang, Bhat, Susheel Sagar, Tiwari, Shalini, Ng, Pei Jia, Gregory, Brian D, Sunkar, Ramanjulu

“…Among many mRNA modifications, adenine methylation at the N position (N -methyladenosine, m A) is known to affect mRNA biology extensively. The influence of m…”
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mRNA ADENOSINE METHYLASE promotes drought tolerance through N6-methyladenosine-dependent and independent impacts on mRNA regulation in Arabidopsis by Ganguly, Diep R, Li, Yongfang, Bhat, Susheel Sagar, Tiwari, Shalini, Ng, Pei Jia, Gregory, Brian D, Sunkar, Ramanjulu

“…Among many mRNA modifications, adenine methylation at the N6 position (N6-methyladenosine, m6A) is known to affect mRNA biology extensively. The influence of…”
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Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics by Crisp, Peter A, Ganguly, Diep, Eichten, Steven R, Borevitz, Justin O, Pogson, Barry J

“…Plants grow in dynamic environments where they can be exposed to a multitude of stressful factors, all of which affect their development, yield, and,…”
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Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis by Crisp, Peter A, Ganguly, Diep R, Smith, Aaron B, Murray, Kevin D, Estavillo, Gonzalo M, Searle, Iain, Ford, Ethan, Bogdanović, Ozren, Lister, Ryan, Borevitz, Justin O, Eichten, Steven R, Pogson, Barry J

“…Stress recovery may prove to be a promising approach to increase plant performance and, theoretically, mRNA instability may facilitate faster recovery…”
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A chloroplast retrograde signal, 3'-phosphoadenosine 5'-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination by Pornsiriwong, Wannarat, Estavillo, Gonzalo M, Chan, Kai Xun, Tee, Estee E, Ganguly, Diep, Crisp, Peter A, Phua, Su Yin, Zhao, Chenchen, Qiu, Jiaen, Park, Jiyoung, Yong, Miing Tiem, Nisar, Nazia, Yadav, Arun Kumar, Schwessinger, Benjamin, Rathjen, John, Cazzonelli, Christopher I, Wilson, Philippa B, Gilliham, Matthew, Chen, Zhong-Hua, Pogson, Barry J

“…Organelle-nuclear retrograde signaling regulates gene expression, but its roles in specialized cells and integration with hormonal signaling remain enigmatic…”
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Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation by Smith, Aaron B., Ganguly, Diep R., Moore, Marten, Bowerman, Andrew F., Janapala, Yoshika, Shirokikh, Nikolay E., Pogson, Barry J., Crisp, Peter A.

“…SUMMARY Transcript stability is an important determinant of its abundance and, consequently, translational output. Transcript destabilisation can be rapid and…”
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Maintenance of pre‐existing DNA methylation states through recurring excess‐light stress by Ganguly, Diep R., Crisp, Peter A., Eichten, Steven R., Pogson, Barry J.

“…The capacity for plant stress priming and memory and the notion of this being underpinned by DNA methylation‐mediated memory is an appealing hypothesis for…”
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The role of SWEET4 proteins in the post-phloem sugar transport pathway of Setaria viridis sink tissues by Chen, Lily, Ganguly, Diep R, Shafik, Sarah H, Danila, Florence, Grof, Christopher P L, Sharwood, Robert E, Furbank, Robert T

“…Abstract In the developing seeds of all higher plants, filial cells are symplastically isolated from the maternal tissue supplying photosynthate to the…”
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RNA Polymerase II Read-Through Promotes Expression of Neighboring Genes in SAL1-PAP-XRN Retrograde Signaling by Crisp, Peter A., Smith, Aaron B., Ganguly, Diep R., Murray, Kevin D., Eichten, Steven R., Millar, Anthony A., Pogson, Barry J.

“…In plants, the molecular function(s) of the nucleus-localized 5 ʹ-3ʹ EXORIBONUCLEASES (XRNs) are unclear; however, their activity is reported to have a…”
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Harnessing genetic variation at regulatory regions to fine-tune traits for climate-resilient crops by Ganguly, Diep R, Hickey, Lee T, Crisp, Peter A

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Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis by Li, Lei, Duncan, Owen, Ganguly, Diep R, Lee, Chun Pong, Crisp, Peter A, Wijerathna-Yapa, Akila, Salih, Karzan, Trösch, Josua, Pogson, Barry J, Millar, A Harvey

“…SignificancePhotoinhibitory high light stress in plants leads to increases in markers of protein degradation and transcriptional up-regulation of proteases and…”
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Autophagy mutants show delayed chloroplast development during de‐etiolation in carbon limiting conditions by Wijerathna‐Yapa, Akila, Signorelli, Santiago, Fenske, Ricarda, Ganguly, Diep R., Stroeher, Elke, Li, Lei, Pogson, Barry J., Duncan, Owen, Millar, A. Harvey

“…SUMMARY Autophagy is a conserved catabolic process that plays an essential role under nutrient starvation conditions and influences different developmental…”
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Elucidating the role of SWEET13 in phloem loading of the C4 grass Setaria viridis by Chen, Lily, Ganguly, Diep R., Shafik, Sarah H., Ermakova, Maria, Pogson, Barry J., Grof, Christopher P. L., Sharwood, Robert E., Furbank, Robert T.

“…SUMMARY Photosynthetic efficiency and sink demand are tightly correlated with rates of phloem loading, where maintaining low cytosolic sugar concentrations is…”
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Elucidating the role of SWEET13 in phloem loading of the C 4 grass Setaria viridis by Chen, Lily, Ganguly, Diep R, Shafik, Sarah H, Ermakova, Maria, Pogson, Barry J, Grof, Christopher P L, Sharwood, Robert E, Furbank, Robert T

“…Photosynthetic efficiency and sink demand are tightly correlated with rates of phloem loading, where maintaining low cytosolic sugar concentrations is…”
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Excess Light Priming in Arabidopsis thaliana Genotypes with Altered DNA Methylomes by Ganguly, Diep R, Stone, Bethany A B, Bowerman, Andrew F, Eichten, Steven R, Pogson, Barry J

“…Plants must continuously react to the ever-fluctuating nature of their environment. Repeated exposure to stressful conditions can lead to priming, whereby…”
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Extending the Genotype in Brachypodium by Including DNA Methylation Reveals a Joint Contribution with Genetics on Adaptive Traits by Eichten, Steven R, Srivastava, Akanksha, Reddiex, Adam J, Ganguly, Diep R, Heussler, Alison, Streich, Jared C, Wilson, Pip B, Borevitz, Justin O

“…Epigenomic changes have been considered a potential missing link underlying phenotypic variation in quantitative traits but is potentially confounded with the…”
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Insights into chloroplast biogenesis and development by Pogson, Barry J., Ganguly, Diep, Albrecht-Borth, Verónica

“…In recent years many advances have been made to obtain insight into chloroplast biogenesis and development. In plants several plastids types exist such as the…”
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Novel resources to investigate leaf plasmodesmata formation in C3 and C4 monocots by Tsang, Hong Ting, Ganguly, Diep R, Furbank, Robert T, von Caemmerer, Susanne, Danila, Florence R

“…Plasmodesmata (PD) are nanochannels that facilitate cell-to-cell transport in plants. More productive and photosynthetically efficient C4 plants form more PD…”
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