Search Results - "Galvão Ferrarini, Mariana"

Hydrogen peroxide production and myo‐inositol metabolism as important traits for virulence of Mycoplasma hyopneumoniae by Ferrarini, Mariana Galvão, Mucha, Scheila Gabriele, Parrot, Delphine, Meiffrein, Guillaume, Ruggiero Bachega, Jose Fernando, Comte, Gilles, Zaha, Arnaldo, Sagot, Marie‐France

“…Summary Mycoplasma hyopneumoniae is the causative agent of enzootic pneumonia. In our previous work, we reconstructed the metabolic models of this species…”
Get full text

MicroRNA Target Identification: Revisiting Accessibility and Seed Anchoring by Homberg, Nicolas, Galvão Ferrarini, Mariana, Gaspin, Christine, Sagot, Marie-France

“…By pairing to messenger RNAs (mRNAs for short), microRNAs (miRNAs) regulate gene expression in animals and plants. Accurately identifying which mRNAs interact…”
Get full text

A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog by Borderes, Marianne, Gasc, Cyrielle, Prestat, Emmanuel, Galvão Ferrarini, Mariana, Vinga, Susana, Boucinha, Lilia, Sagot, Marie-France

“…Abstract The human gut microbiota performs functions that are essential for the maintenance of the host physiology. However, characterizing the functioning of…”
Get full text

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system by Ferrarini, Mariana Galvão, Dell’Aglio, Elisa, Vallier, Agnès, Balmand, Séverine, Vincent-Monégat, Carole, Hughes, Sandrine, Gillet, Benjamin, Parisot, Nicolas, Zaidman-Rémy, Anna, Vieira, Cristina, Heddi, Abdelaziz, Rebollo, Rita

“…Abstract Background Many insects house symbiotic intracellular bacteria (endosymbionts) that provide them with essential nutrients, thus promoting the usage of…”
Get full text

Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity by Ferrarini, Mariana Galvão, Vallier, Agnès, Dell'Aglio, Elisa, Balmand, Séverine, Vincent-Monégat, Carole, Debbache, Mériem, Maire, Justin, Parisot, Nicolas, Zaidman-Rémy, Anna, Heddi, Abdelaziz, Rebollo, Rita

“…Insects often establish long-term relationships with intracellular symbiotic bacteria, i.e., endosymbionts, that provide them with essential nutrients such as…”
Get full text

BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data by Moraga, Carol, Sanchez, Evelyn, Ferrarini, Mariana Galvão, Gutierrez, Rodrigo A, Vidal, Elena A, Sagot, Marie-France

“…Abstract MicroRNAs (miRNAs) are small noncoding RNAs that are key players in the regulation of gene expression. In the past decade, with the increasing…”
Get full text

Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp by Ferrarini, Mariana Galvão, Vallier, Agnès, Vincent-Monégat, Carole, Dell'Aglio, Elisa, Gillet, Benjamin, Hughes, Sandrine, Hurtado, Ophélie, Condemine, Guy, Zaidman-Rémy, Anna, Rebollo, Rita, Parisot, Nicolas, Heddi, Abdelaziz

“…Insects living in nutritionally poor environments often establish long-term relationships with intracellular bacteria that supplement their diets and improve…”
Get full text

Totoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations by Galvão Ferrarini, Mariana, Ziska, Irene, Andrade, Ricardo, Julien-Laferrière, Alice, Duchemin, Louis, César, Jr, Roberto Marcondes, Mary, Arnaud, Vinga, Susana, Sagot, Marie-France

“…The increasing availability of metabolomic data and their analysis are improving the understanding of cellular mechanisms and how biological systems respond to…”
Get full text

Modulation of Klebsiella pneumoniae Outer Membrane Vesicle Protein Cargo under Antibiotic Treatment by Lucena, Aline Castro Rodrigues, Ferrarini, Mariana Galvão, de Oliveira, Willian Klassen, Marcon, Bruna Hilzendeger, Morello, Luis Gustavo, Alves, Lysangela Ronalte, Faoro, Helisson

“…is a nosocomial pathogen and an important propagator of multidrug-resistant (MDR) and extensively drug-resistant (XDR) strains. Like other Gram-negative…”
Get full text

Transcriptomic-based selection of reference genes for quantitative real-time PCR in an insect endosymbiotic model by Vallier, Agnès, Dell’Aglio, Elisa, Ferrarini, Mariana Galvão, Hurtado, Ophélie, Vincent-Monégat, Carole, Heddi, Abdelaziz, Rebollo, Rita, Zaidman-Rémy, Anna

“…Reference genes are a fundamental tool for analyses of gene expression by real-time quantitative PCR (qRT-PCR), in that they ensure the correct comparison…”
Get full text

Dichloroacetate and Pyruvate Metabolism: Pyruvate Dehydrogenase Kinases as Targets Worth Investigating for Effective Therapy of Toxoplasmosis by Ferrarini, Mariana Galvão, Nisimura, Lindice Mitie, Girard, Richard Marcel Bruno Moreira, Alencar, Mayke Bezerra, Fragoso, Mariana Sayuri Ishikawa, Araújo-Silva, Carlla Assis, Veiga, Alan de Almeida, Abud, Ana Paula Ressetti, Nardelli, Sheila Cristina, Vommaro, Rossiane C, Silber, Ariel Mariano, France-Sagot, Marie, Ávila, Andréa Rodrigues

“…Toxoplasmosis, a protozoan infection caused by , is estimated to affect around 2.5 billion people worldwide. Nevertheless, the side effects of drugs combined…”
Get full text

Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil by Maire, Justin, Parisot, Nicolas, Ferrarini, Mariana Galvao, Vallier, Agnès, Gillet, Benjamin, Hughes, Sandrine, Balmand, Séverine, Vincent-Monégat, Carole, Zaidman-Rémy, Anna, Heddi, Abdelaziz

“…Bacterial intracellular symbiosis (endosymbiosis) is widespread in nature and impacts many biological processes. In holometabolous symbiotic insects,…”
Get full text

The transposable element-rich genome of the cereal pest Sitophilus oryzae by Parisot, Nicolas, Vargas-Chávez, Carlos, Goubert, Clément, Baa-Puyoulet, Patrice, Balmand, Séverine, Beranger, Louis, Blanc, Caroline, Bonnamour, Aymeric, Boulesteix, Matthieu, Burlet, Nelly, Calevro, Federica, Callaerts, Patrick, Chancy, Théo, Charles, Hubert, Colella, Stefano, Da Silva Barbosa, André, Dell'Aglio, Elisa, Di Genova, Alex, Febvay, Gérard, Gabaldón, Toni, Galvão Ferrarini, Mariana, Gerber, Alexandra, Gillet, Benjamin, Hubley, Robert, Hughes, Sandrine, Jacquin-Joly, Emmanuelle, Maire, Justin, Marcet-Houben, Marina, Masson, Florent, Meslin, Camille, Montagné, Nicolas, Moya, Andrés, Ribeiro de Vasconcelos, Ana Tereza, Richard, Gautier, Rosen, Jeb, Sagot, Marie-France, Smit, Arian F A, Storer, Jessica M, Vincent-Monegat, Carole, Vallier, Agnès, Vigneron, Aurélien, Zaidman-Rémy, Anna, Zamoum, Waël, Vieira, Cristina, Rebollo, Rita, Latorre, Amparo, Heddi, Abdelaziz

“…The rice weevil Sitophilus oryzae is one of the most important agricultural pests, causing extensive damage to cereal in fields and to stored grains. S. oryzae…”
Get full text

Investigating the Human Host-ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox by Lal, Avantika, Galvao Ferrarini, Mariana, Gruber, Andreas J

“…Viruses have evolved numerous mechanisms to exploit the molecular machinery of their host cells, including the broad spectrum of host RNA-binding proteins…”
Get full text

Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice by Rebollo, Rita, Galvão-Ferrarini, Mariana, Gagnier, Liane, Zhang, Ying, Ferraj, Ardian, Beck, Christine R, Lorincz, Matthew C, Mager, Dixie L

“…Insertions of endogenous retroviruses cause a significant fraction of mutations in inbred mice but not all strains are equally susceptible. Notably, most new…”
Get full text

Trypanosoma cruzi XRNA granules colocalise with distinct mRNP granules at the nuclear periphery by Costa, Jimena Ferreira da, Ferrarini, Mariana Galvão, Nardelli, Sheila Cristina, Goldenberg, Samuel, Ávila, Andréa Rodrigues, Holetz, Fabíola Barbieri

“…BACKGROUND Eukaryotic ribonucleoprotein (RNP) granules are important for the regulation of RNA fate. RNP granules exist in trypanosomatids; however, their…”
Get full text

MOOMIN – Mathematical explOration of ’Omics data on a MetabolIc Network by Pusa, Taneli, Ferrarini, Mariana Galvão, Andrade, Ricardo, Mary, Arnaud, Marchetti-Spaccamela, Alberto, Stougie, Leen, Sagot, Marie-France

“…Abstract Motivation Analysis of differential expression of genes is often performed to understand how the metabolic activity of an organism is impacted by a…”
Get full text

Phenotypic and Transcriptomic Responses to Stress Differ According to Population Geography in an Invasive Species by Marin, Pierre, Jaquet, Angelo, Picarle, Justine, Fablet, Marie, Merel, Vincent, Delignette-Muller, Marie-Laure, Ferrarini, Mariana Galvão, Gibert, Patricia, Vieira, Cristina

“…Abstract Adaptation to rapid environmental changes must occur within a short-time scale. In this context, studies of invasive species may provide insights into…”
Get full text

Modulation of IKlebsiella pneumoniae/I Outer Membrane Vesicle Protein Cargo under Antibiotic Treatment by Lucena, Aline Castro Rodrigues, Ferrarini, Mariana Galvão, de Oliveira, Willian Klassen, Marcon, Bruna Hilzendeger, Morello, Luis Gustavo, Alves, Lysangela Ronalte, Faoro, Helisson

“…Klebsiella pneumoniae is a nosocomial pathogen and an important propagator of multidrug-resistant (MDR) and extensively drug-resistant (XDR) strains. Like…”
Get full text

Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration by Clapes, Thomas, Polyzou, Aikaterini, Prater, Pia, Sagar, Morales-Hernández, Antonio, Ferrarini, Mariana Galvao, Kehrer, Natalie, Lefkopoulos, Stylianos, Bergo, Veronica, Hummel, Barbara, Obier, Nadine, Maticzka, Daniel, Bridgeman, Anne, Herman, Josip S., Ilik, Ibrahim, Klaeylé, Lhéanna, Rehwinkel, Jan, McKinney-Freeman, Shannon, Backofen, Rolf, Akhtar, Asifa, Cabezas-Wallscheid, Nina, Sawarkar, Ritwick, Rebollo, Rita, Grün, Dominic, Trompouki, Eirini

“…Haematopoietic stem cells (HSCs) are normally quiescent, but have evolved mechanisms to respond to stress. Here, we evaluate haematopoietic regeneration…”
Get full text