Search Results - "Gaborova, Romana"

PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education by Varadi, Mihaly, Anyango, Stephen, Appasamy, Sri Devan, Armstrong, David, Bage, Marcus, Berrisford, John, Choudhary, Preeti, Bertoni, Damian, Deshpande, Mandar, Leines, Grisell Diaz, Ellaway, Joseph, Evans, Genevieve, Gaborova, Romana, Gupta, Deepti, Gutmanas, Aleksandras, Harrus, Deborah, Kleywegt, Gerard J., Bueno, Weslley Morellato, Nadzirin, Nurul, Nair, Sreenath, Pravda, Lukas, Afonso, Marcelo Querino Lima, Sehnal, David, Tanweer, Ahsan, Tolchard, James, Abrams, Charlotte, Dunlop, Roisin, Velankar, Sameer

“…The archiving and dissemination of protein and nucleic acid structures as well as their structural, functional and biophysical annotations is an essential task…”
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Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data by Appasamy, Sri Devan, Berrisford, John, Gaborova, Romana, Nair, Sreenath, Anyango, Stephen, Grudinin, Sergei, Deshpande, Mandar, Armstrong, David, Pidruchna, Ivanna, Ellaway, Joseph I. J., Leines, Grisell Díaz, Gupta, Deepti, Harrus, Deborah, Varadi, Mihaly, Velankar, Sameer

“…Macromolecular complexes are essential functional units in nearly all cellular processes, and their atomic-level understanding is critical for elucidating and…”
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PDBe: improved findability of macromolecular structure data in the PDB by Armstrong, David R, Berrisford, John M, Conroy, Matthew J, Gutmanas, Aleksandras, Anyango, Stephen, Choudhary, Preeti, Clark, Alice R, Dana, Jose M, Deshpande, Mandar, Dunlop, Roisin, Gane, Paul, Gáborová, Romana, Gupta, Deepti, Haslam, Pauline, Koča, Jaroslav, Mak, Lora, Mir, Saqib, Mukhopadhyay, Abhik, Nadzirin, Nurul, Nair, Sreenath, Paysan-Lafosse, Typhaine, Pravda, Lukas, Sehnal, David, Salih, Osman, Smart, Oliver, Tolchard, James, Varadi, Mihaly, Svobodova-Vařeková, Radka, Zaki, Hossam, Kleywegt, Gerard J, Velankar, Sameer

“…Abstract The Protein Data Bank in Europe (PDBe), a founding member of the Worldwide Protein Data Bank (wwPDB), actively participates in the deposition,…”
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Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature by Vollmar, Melanie, Tirunagari, Santosh, Harrus, Deborah, Armstrong, David, Gáborová, Romana, Gupta, Deepti, Afonso, Marcelo Querino Lima, Evans, Genevieve, Velankar, Sameer

“…We present a novel system that leverages curators in the loop to develop a dataset and model for detecting structure features and functional annotations at…”
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EMDB—the Electron Microscopy Data Bank by Turner, Jack, Abbott, Sanja, Fonseca, Neli, Pye, Ryan, Carrijo, Lucas, Duraisamy, Amudha Kumari, Salih, Osman, Wang, Zhe, Kleywegt, Gerard J, Morris, Kyle L, Patwardhan, Ardan, Burley, Stephen K, Crichlow, Gregg, Feng, Zukang, Flatt, Justin W, Ghosh, Sutapa, Hudson, Brian P, Lawson, Catherine L, Liang, Yuhe, Peisach, Ezra, Persikova, Irina, Sekharan, Monica, Shao, Chenghua, Young, Jasmine, Velankar, Sameer, Armstrong, David, Bage, Marcus, Bueno, Wesley Morellato, Evans, Genevieve, Gaborova, Romana, Ganguly, Sudakshina, Gupta, Deepti, Harrus, Deborah, Tanweer, Ahsan, Bansal, Manju, Rangannan, Vetriselvi, Kurisu, Genji, Cho, Hasumi, Ikegawa, Yasuyo, Kengaku, Yumiko, Kim, Ju Yaen, Niwa, Satomi, Sato, Junko, Takuwa, Ayako, Yu, Jian, Hoch, Jeffrey C, Baskaran, Kumaran, Xu, Wenqing, Zhang, Weizhe, Ma, Xiaodan

“…Abstract The Electron Microscopy Data Bank (EMDB) is the global public archive of three-dimensional electron microscopy (3DEM) maps of biological specimens…”
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Protein Data Bank: the single global archive for 3D macromolecular structure data by Burley, Stephen K., Berman, Helen M., Bhikadiya, Charmi, Bi, Chunxiao, Chen, Li, Costanzo, Luigi Di, Christie, Cole, Duarte, Jose M., Dutta, Shuchismita, Feng, Zukang, Ghosh, Sutapa, Goodsell, David S., Green, Rachel Kramer, Guranovic, Vladimir, Guzenko, Dmytro, Hudson, Brian P., Liang, Yuhe, Lowe, Robert, Peisach, Ezra, Periskova, Irina, Randle, Chris, Rose, Alexander, Sekharan, Monica, Shao, Chenghua, Tao, Yi-Ping, Valasatava, Yana, Voigt, Maria, Westbrook, John, Young, Jasmine, Zardecki, Christine, Zhuravleva, Marina, Kurisu, Genji, Nakamura, Haruki, Kengaku, Yumiko, Cho, Hasumi, Sato, Junko, Kim, Ju Yaen, Ikegawa, Yasuyo, Nakagawa, Atsushi, Yamashita, Reiko, Kudou, Takahiro, Bekker, Gert-Jan, Suzuki, Hirofumi, Iwata, Takeshi, Yokochi, Masashi, Kobayashi, Naohiro, Fujiwara, Toshimichi, Velankar, Sameer, Kleywegt, Gerard J., Anyango, Stephen, Armstrong, David R., Berrisford, John M., Conroy, Matthew J., Dana, Jose M., Deshpande, Mandar, Gane, Paul, Gáborová, Romana, Gupta, Deepti, Gutmanas, Aleksandras, Koča, Jaroslav, Mak, Lora, Mir, Saqib, Mukhopadhyay, Abhik, Nadzirin, Nurul, Nair, Sreenath, Patwardhan, Ardan, Paysan-Lafosse, Typhaine, Pravda, Lukas, Salih, Osman, Sehnal, David, Varadi, Mihaly, Vařeková, Radka, Markley, John L., Hoch, Jeffrey C., Romero, Pedro R., Baskaran, Kumaran, Maziuk, Dimitri, Ulrich, Eldon L., Wedell, Jonathan R., Yao, Hongyang, Livny, Miron, Ioannidis, Yannis E.

“…The Protein Data Bank (PDB) is the single global archive of experimentally determined three-dimensional (3D) structure data of biological macromolecules. Since…”
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