Search Results - "GOLTSMAN, Eugene"

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors by Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.

“…Our understanding of polyploid genome evolution is constrained because we cannot know the exact founders of a particular polyploid. To differentiate between…”
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Terabase-scale metagenome coassembly with MetaHipMer by Hofmeyr, Steven, Egan, Rob, Georganas, Evangelos, Copeland, Alex C., Riley, Robert, Clum, Alicia, Eloe-Fadrosh, Emiley, Roux, Simon, Goltsman, Eugene, Buluç, Aydın, Rokhsar, Daniel, Oliker, Leonid, Yelick, Katherine

“…Metagenome sequence datasets can contain terabytes of reads, too many to be coassembled together on a single shared-memory computer; consequently, they have…”
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The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode by Foster, Jeremy, Ganatra, Mehul, Kamal, Ibrahim, Ware, Jennifer, Makarova, Kira, Ivanova, Natalia, Bhattacharyya, Anamitra, Kapatral, Vinayak, Kumar, Sanjay, Posfai, Janos, Vincze, Tamas, Ingram, Jessica, Moran, Laurie, Lapidus, Alla, Omelchenko, Marina, Kyrpides, Nikos, Ghedin, Elodie, Wang, Shiliang, Goltsman, Eugene, Joukov, Victor, Ostrovskaya, Olga, Tsukerman, Kiryl, Mazur, Mikhail, Comb, Donald, Koonin, Eugene, Slatko, Barton

“…Complete genome DNA sequence and analysis is presented for Wolbachia, the obligate alpha-proteobacterial endosymbiont required for fertility and survival of…”
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The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri by Frese, Steven A, Benson, Andrew K, Tannock, Gerald W, Loach, Diane M, Kim, Jaehyoung, Zhang, Min, Oh, Phaik Lyn, Heng, Nicholas C K, Patil, Prabhu B, Juge, Nathalie, Mackenzie, Donald A, Pearson, Bruce M, Lapidus, Alla, Dalin, Eileen, Tice, Hope, Goltsman, Eugene, Land, Miriam, Hauser, Loren, Ivanova, Natalia, Kyrpides, Nikos C, Walter, Jens

“…Recent research has provided mechanistic insight into the important contributions of the gut microbiota to vertebrate biology, but questions remain about the…”
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Use of simulated data sets to evaluate the fidelity of metagenomic processing methods by Mavromatis, Konstantinos, Ivanova, Natalia, Barry, Kerrie, Shapiro, Harris, Goltsman, Eugene, McHardy, Alice C, Rigoutsos, Isidore, Salamov, Asaf, Korzeniewski, Frank, Land, Miriam, Lapidus, Alla, Grigoriev, Igor, Richardson, Paul, Hugenholtz, Philip, Kyrpides, Nikos C

“…Metagenomics is a rapidly emerging field of research for studying microbial communities. To evaluate methods presently used to process metagenomic sequences,…”
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Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis by McBride, Mark J, Xie, Gary, Martens, Eric C, Lapidus, Alla, Henrissat, Bernard, Rhodes, Ryan G, Goltsman, Eugene, Wang, Wei, Xu, Jian, Hunnicutt, David W, Staroscik, Andrew M, Hoover, Timothy R, Cheng, Yi-Qiang, Stein, Jennifer L

“…The 6.10-Mb genome sequence of the aerobic chitin-digesting gliding bacterium Flavobacterium johnsoniae (phylum Bacteroidetes) is presented. F. johnsoniae is a…”
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korarchaeal genome reveals insights into the evolution of the Archaea by Elkins, James G, Podar, Mircea, Graham, David E, Makarova, Kira S, Wolf, Yuri, Randau, Lennart, Hedlund, Brian P, Brochier-Armanet, Céline, Kunin, Victor, Anderson, Iain, Lapidus, Alla, Goltsman, Eugene, Barry, Kerrie, Koonin, Eugene V, Hugenholtz, Phil, Kyrpides, Nikos, Wanner, Gerhard, Richardson, Paul, Keller, Martin, Stetter, Karl O

“…The candidate division Korarchaeota comprises a group of uncultivated microorganisms that, by their small subunit rRNA phylogeny, may have diverged early from…”
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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography by Normand, Philippe, Lapierre, Pascal, Tisa, Louis S, Gogarten, Johann Peter, Alloisio, Nicole, Bagnarol, Emilie, Bassi, Carla A, Berry, Alison M, Bickhart, Derek M, Choisne, Nathalie, Couloux, Arnaud, Cournoyer, Benoit, Cruveiller, Stephane, Daubin, Vincent, Demange, Nadia, Francino, Maria Pilar, Goltsman, Eugene, Huang, Ying, Kopp, Olga R, Labarre, Laurent, Lapidus, Alla, Lavire, Celine, Marechal, Joelle, Martinez, Michele, Mastronunzio, Juliana E, Mullin, Beth C, Niemann, James, Pujic, Pierre, Rawnsley, Tania, Rouy, Zoe, Schenowitz, Chantal, Sellstedt, Anita, Tavares, Fernando, Tomkins, Jeffrey P, Vallenet, David, Valverde, Claudio, Wall, Luis G, Wang, Ying, Medigue, Claudine, Benson, David R

“…Soil bacteria that also form mutualistic symbioses in plants encounter two major levels of selection. One occurs during adaptation to and survival in soil, and…”
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Genomic characterization of methanomicrobiales reveals three classes of methanogens by Anderson, Iain, Ulrich, Luke E, Lupa, Boguslaw, Susanti, Dwi, Porat, Iris, Hooper, Sean D, Lykidis, Athanasios, Sieprawska-Lupa, Magdalena, Dharmarajan, Lakshmi, Goltsman, Eugene, Lapidus, Alla, Saunders, Elizabeth, Han, Cliff, Land, Miriam, Lucas, Susan, Mukhopadhyay, Biswarup, Whitman, William B, Woese, Carl, Bristow, James, Kyrpides, Nikos

“…Methanomicrobiales is the least studied order of methanogens. While these organisms appear to be more closely related to the Methanosarcinales in…”
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Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus by Bolotin, A, Quinquis, B, Renault, P, Sorokin, A, Ehrlich, S.D, Kulakauskas, S, Lapidus, A, Goltsman, E, Mazur, M, Pusch, G.D

“…The lactic acid bacterium Streptococcus thermophilus is widely used for the manufacture of yogurt and cheese. This dairy species of major economic importance…”
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Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides by McMurdie, Paul J, Behrens, Sebastian F, Müller, Jochen A, Göke, Jonathan, Ritalahti, Kirsti M, Wagner, Ryan, Goltsman, Eugene, Lapidus, Alla, Holmes, Susan, Löffler, Frank E, Spormann, Alfred M

“…Vinyl chloride (VC) is a human carcinogen and widespread priority pollutant. Here we report the first, to our knowledge, complete genome sequences of…”
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Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei by Morales, Jorge, Kokkori, Sofia, Weidauer, Diana, Chapman, Jarrod, Goltsman, Eugene, Rokhsar, Daniel, Grossman, Arthur R, Nowack, Eva C M

“…Bacterial endosymbionts are found across the eukaryotic kingdom and profoundly impacted eukaryote evolution. In many endosymbiotic associations with vertically…”
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Comparison of the Complete Genome Sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000 by Feil, Helene, Feil, William S., Chain, Patrick, Larimer, Frank, DiBartolo, Genevieve, Copeland, Alex, Lykidis, Athanasios, Trong, Stephen, Nolan, Matt, Goltsman, Eugene, Thiel, James, Malfatti, Stephanie, Loper, Joyce E., Lapidus, Alla, Detter, John C., Land, Miriam, Richardson, Paul M., Kyrpides, Nikos C., Ivanova, Natalia, Lindow, Steven E.

“…The complete genomic sequence of Pseudomonas syringae pv. syringae B728a (Pss B728a) has been determined and is compared with that of P. syringae pv. tomato…”
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Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity by Lapidus, Alla, Goltsman, Eugene, Auger, Sandrine, Galleron, Nathalie, Ségurens, Béatrice, Dossat, Carole, Land, Miriam L., Broussolle, Veronique, Brillard, Julien, Guinebretiere, Marie-Helene, Sanchis, Vincent, Nguen-the, Christophe, Lereclus, Didier, Richardson, Paul, Wincker, Patrick, Weissenbach, Jean, Ehrlich, S. Dusko, Sorokin, Alexei

“…The Bacillus cereus group represents sporulating soil bacteria containing pathogenic strains which may cause diarrheic or emetic food poisoning outbreaks…”
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The Genome Sequence of the Facultative Intracellular Pathogen Brucella melitensis by DelVecchio, Vito G., Kapatral, Vinayak, Redkar, Rajendra J., Patra, Guy, Mujer, Cesar, Los, Tamara, Ivanova, Natalia, Anderson, Iain, Bhattacharyya, Anamitra, Lykidis, Athanasios, Reznik, Gary, Jablonski, Lynn, Larsen, Niels, D'Souza, Mark, Bernal, Axel, Mazur, Mikhail, Goltsman, Eugene, Selkov, Eugene, Elzer, Philip H., Hagius, Sue, O'Callaghan, David, Letesson, Jean-Jacques, Haselkorn, Robert, Kyrpides, Nikos, Overbeek, Ross

“…Brucella melitensis is a facultative intracellular bacterial pathogen that causes abortion in goats and sheep and Malta fever in humans. The genome of B…”
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Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586 by Kapatral, Vinayak, Anderson, Iain, Ivanova, Natalia, Reznik, Gary, Los, Tamara, Lykidis, Athanasios, Bhattacharyya, Anamitra, Bartman, Allen, Gardner, Warren, Grechkin, Galina, Zhu, Lihua, Vasieva, Olga, Chu, Lien, Kogan, Yakov, Chaga, Oleg, Goltsman, Eugene, Bernal, Axel, Larsen, Niels, D'Souza, Mark, Walunas, Theresa, Pusch, Gordon, Haselkorn, Robert, Fonstein, Michael, Kyrpides, Nikos, Overbeek, Ross

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Genome Sequence of the Verrucomicrobium Opitutus terrae PB90-1, an Abundant Inhabitant of Rice Paddy Soil Ecosystems by VAN PASSEL, Mark W. J, KANT, Ravi, HUI SUN, SCHMUTZ, Jeremy, LARIMER, Frank W, LAND, Miriam L, HAUSER, Loren, KYRPIDES, Nikolaos, MIKHAILOVA, Natalia, RICHARDSON, P. Paul, JANSSEN, Peter H, DE VOS, Willem M, PALVA, Airi, SMIDT, Hauke, COPELAND, Alex, LUCAS, Susan, LAPIDUS, Alia, DEL RIO, Tijana Glavina, PITLUCK, Sam, GOLTSMAN, Eugene, CLUM, Alicia

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Plant Pan-Genomics Comes of Age by Lei, Li, Goltsman, Eugene, Goodstein, David, Wu, Guohong Albert, Rokhsar, Daniel S, Vogel, John P

“…A pan-genome is the nonredundant collection of genes and or DNA sequences in a species. Numerous studies have shown that plant pan-genomes are typically much…”
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Critical Assessment of Metagenome Interpretation: the second round of challenges by Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Kwan, Jason, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn

“…Evaluating metagenomic software is key for optimizing metagenome interpretation and focus of the Initiative for the Critical Assessment of Metagenome…”
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Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis by Ivanova, Natalia, Sorokin, Alexei, Anderson, Iain, Galleron, Nathalie, Candelon, Benjamin, Kapatral, Vinayak, Bhattacharyya, Anamitra, Reznik, Gary, Mikhailova, Natalia, Lapidus, Alla, Chu, Lien, Mazur, Michael, Goltsman, Eugene, Larsen, Niels, D'Souza, Mark, Walunas, Theresa, Grechkin, Yuri, Pusch, Gordon, Haselkorn, Robert, Fonstein, Michael, Dusko Ehrlich, S, Overbeek, Ross, Kyrpides, Nikos

“…Bacillus cereus is an opportunistic pathogen causing food poisoning manifested by diarrhoeal or emetic syndromes. It is closely related to the animal and human…”
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