Search Results - "GELFAND, M. S"

Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 by Gerdes, S Y, Scholle, M D, Campbell, J W, Balázsi, G, Ravasz, E, Daugherty, M D, Somera, A L, Kyrpides, N C, Anderson, I, Gelfand, M S, Bhattacharya, A, Kapatral, V, D'Souza, M, Baev, M V, Grechkin, Y, Mseeh, F, Fonstein, M Y, Overbeek, R, Barabási, A-L, Oltvai, Z N, Osterman, A L

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Regulation and Evolution of Malonate and Propionate Catabolism in Proteobacteria by Suvorova, I. A, Ravcheev, D. A, Gelfand, M. S

“…Bacteria catabolize malonate via two pathways, encoded by the mdc and mat genes. In various bacteria, transcription of these genes is controlled by the GntR…”
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A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length by Favorov, A. V., Gelfand, M. S., Gerasimova, A. V., Ravcheev, D. A., Mironov, A. A., Makeev, V. J.

“…Motivation: Transcription regulatory protein factors often bind DNA as homo-dimers or hetero-dimers. Thus they recognize structured DNA motifs that are…”
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Prediction of transcription regulatory sites in Archaea by a comparative genomic approach by Gelfand, M S, Koonin, E V, Mironov, A A

“…Intragenomic and intergenomic comparisons of upstream nucleotide sequences of archaeal genes were performed with the goal of predicting transcription…”
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RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes by Kazakov, Alexei E, Cipriano, Michael J, Novichkov, Pavel S, Minovitsky, Simon, Vinogradov, Dmitry V, Arkin, Adam, Mironov, Andrey A, Gelfand, Mikhail S, Dubchak, Inna

“…RegTransBase is a manually curated database of regulatory interactions in prokaryotes that captures the knowledge in public scientific literature using a…”
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Comparative genomics of regulation of heavy metal resistance in Eubacteria by Permina, E A, Kazakov, A E, Kalinina, O V, Gelfand, M S

“…Heavy metal resistance (HMR) in Eubacteria is regulated by a variety of systems including transcription factors from the MerR family (COG0789). The HMR systems…”
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Re: 'Cefazolin versus anti-staphylococcal penicillins for the treatment of patients with Staphylococcus aureus bacteremia' by Weis et al by Gelfand, M.S., Cleveland, K.O.

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Towards practical applications in quantum computational biology by Fedorov, A K, Gelfand, M S

“…Fascinating progress in understanding our world at the smallest scales moves us to the border of a new technological revolution governed by quantum physics. By…”
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RNA editing: Classical cases and outlook of new technologies by Stepanova, V. V., Gelfand, M. S.

“…This article provides an overview of the studied RNA editing cases and examples of prediction errors at RNA editing sites, as well as ways to minimize them…”
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Comparative analysis of FUR regulons in gamma-proteobacteria by Panina, E M, Mironov, A A, Gelfand, M S

“…Iron is an essential element for the survival and pathogenesis of bacteria. The strict control of iron homeostasis is mediated by the FUR repressor, which is…”
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Connection between Hexuronate Metabolism and the Ability of Escherichia coli to Adhesion and Biofilm Formation by Bessonova, T. A., Kuznetsova, U. D., Magkaev, A. T., Gelfand, M. S., Ozoline, O. N., Tutukina, M. N.

“…The formation of bacterial biofilms is an important factor of the chronic infection development, which requires the search for effective ways to prevent it…”
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Gene recognition via spliced sequence alignment by Gelfand, M.S. (Russian Academy of Sciences, Moscow, Russia.), Mironov, A.A, Pevzner, P.A

“…Gene recognition is one of the most important problems in computational molecular biology. Previous attempts to solve this problem were based on statistics,…”
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A case of disseminated histoplasmosis following autologous stem cell transplantation for Hodgkin's lymphoma: an initial misdiagnosis with a false-positive serum galactomannan assay by Jones, O., Cleveland, K.O., Gelfand, M.S.

“…: Systemic histoplasmosis is uncommonly reported in patients who have undergone bone marrow or solid organ transplantation. Diagnosis of systemic…”
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Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes by Mironov, A. A., Koonin, E. V., Roytberg, M. A., Gelfand, M. S.

“…Recognition of transcription regulation sites (operators) is a hard problem in computational molecular biology. In most cases, small sample size and low degree…”
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Transcriptional regulation of transport and utilization systems for hexuronides, hexuronates and hexonates in gamma purple bacteria by Rodionov, Dmitry A., Mironov, Andrey A., Rakhmaninova, Alexandra B., Gelfand, Mikhail S.

“…The comparative approach is a powerful tool for the analysis of gene regulation in bacterial genomes. It can be applied to the analysis of regulons that have…”
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Avoidance of palindromic words in bacterial and archaeal genomes: a close connection with restriction enzymes by Gelfand, Mikhail S., Koonin, Eugene V.

“…Short palindromic sequences (4, 5 and 6 bp palindromes) are avoided at a statistically significant level in the genomes of several bacteria, including the…”
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SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins by Kalinina, Olga V., Novichkov, Pavel S., Mironov, Andrey A., Gelfand, Mikhail S., Rakhmaninova, Aleksandra B.

“…SDPpred (Specificity Determining Position prediction) is a tool for prediction of residues in protein sequences that determine the proteins' functional…”
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Machine learning study of DNA binding by transcription factors from the LacI family by Fedonin, G. G., Rakhmaninova, A. B., Korostelev, Yu. D., Laikova, O. N., Gelfand, M. S.

“…We studied 1372 LacI-family transcription factors and their 4484 DNA binding sites using machine learning algorithms and feature selection techniques. The…”
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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach by Novichkov, Pavel S, Rodionov, Dmitry A, Stavrovskaya, Elena D, Novichkova, Elena S, Kazakov, Alexey E, Gelfand, Mikhail S, Arkin, Adam P, Mironov, Andrey A, Dubchak, Inna

“…RegPredict web server is designed to provide comparative genomics tools for reconstruction and analysis of microbial regulons using comparative genomics…”
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Cometabolic activity of aphid Acyrthosiphon pisum and symbiotic bacterium Buchnera aphidicola APS by Rakitin, D. I, Gelfand, M. S

“…Endocytobiosis is a particular case of symbiosis where a symbiont lives within the host cell. Endocytobiosis increases biodiversity and generates organisms…”
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