Search Results - "Fukudome, Akihito"

A DCL3 dicing code within Pol IV-RDR2 transcripts diversifies the siRNA pool guiding RNA-directed DNA methylation by Loffer, Andrew, Singh, Jasleen, Fukudome, Akihito, Mishra, Vibhor, Wang, Feng, Pikaard, Craig S

“…In plants, selfish genetic elements, including retrotransposons and DNA viruses, are transcriptionally silenced by RNA-directed DNA methylation. Guiding the…”
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Distinct substrate specificities of Arabidopsis DCL3 and DCL4 by Nagano, Hideaki, Fukudome, Akihito, Hiraguri, Akihiro, Moriyama, Hiromitsu, Fukuhara, Toshiyuki

“…In Arabidopsis thaliana, Dicer-like 3 (DCL3) and Dicer-like 4 (DCL4) cleave long, perfect double-stranded RNAs (dsRNAs) into 24 and 21 nucleotides (nt) small…”
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Salt Stress and CTD PHOSPHATASE-LIKE4 Mediate the Switch between Production of Small Nuclear RNAs and mRNAs by Fukudome, Akihito, Sun, Di, Zhang, Xiuren, Koiwa, Hisashi

“…Phosphorylation of the RNA polymerase II (Pol II) C-terminal domain (CTD) regulates transcription of protein-coding mRNAs and noncoding RNAs. CTD function in…”
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Assembly of a dsRNA synthesizing complex: RNA-DEPENDENT RNA POLYMERASE 2 contacts the largest subunit of NUCLEAR RNA POLYMERASE IV by Mishra, Vibhor, Singh, Jasleen, Wang, Feng, Zhang, Yixiang, Fukudom, Akihito, Trinidad, Jonathan C., Takagi, Yuichiro, Pikaard, Craig S.

“…In plants, transcription of selfish genetic elements such as transposons and DNA viruses is suppressed by RNA-directed DNA methylation. This process is guided…”
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Purification and characterization of Arabidopsis thaliana oligosaccharyltransferase complexes from the native host: a protein super‐expression system for structural studies by Jeong, In Sil, Lee, Sangmin, Bonkhofer, Florian, Tolley, Jordan, Fukudome, Akihito, Nagashima, Yukihiro, May, Kimberly, Rips, Stephan, Lee, Sang Y., Gallois, Patrick, Russell, William K., Jung, Hyun Suk, Schaewen, Antje, Koiwa, Hisashi

“…Summary The oligosaccharyltransferase (OT) complex catalyzes N‐glycosylation of nascent secretory polypeptides in the lumen of the endoplasmic reticulum…”
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Plant dicer-like proteins: double-stranded RNA-cleaving enzymes for small RNA biogenesis by Fukudome, Akihito, Fukuhara, Toshiyuki

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Specific requirement of DRB4, a dsRNA-binding protein, for the in vitro dsRNA-cleaving activity of Arabidopsis Dicer-like 4 by Fukudome, Akihito, Kanaya, Akihiro, Egami, Mai, Nakazawa, Yukihiro, Hiraguri, Akihiro, Moriyama, Hiromitsu, Fukuhara, Toshiyuki

“…Arabidopsis thaliana Dicer-like 4 (DCL4) produces 21-nt small interfering RNAs from both endogenous and exogenous double-stranded RNAs (dsRNAs), and it…”
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Post-Translational Regulation of the Dicing Activities of Arabidopsis DICER-LIKE 3 and 4 by Inorganic Phosphate and the Redox State by Seta, Atsushi, Tabara, Midori, Nishibori, Yuki, Hiraguri, Akihiro, Ohkama-Ohtsu, Naoko, Yokoyama, Tadashi, Hara, Satoshi, Yoshida, Keisuke, Hisabori, Toru, Fukudome, Akihito, Koiwa, Hisashi, Moriyama, Hiromitsu, Takahashi, Nobuhiro, Fukuhara, Toshiyuki

“…In Arabidopsis thaliana, small interfering RNAs (siRNAs) generated by two Dicer isoforms, DCL3 and DCL4, function in distinct epigenetic processes, i.e…”
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Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan by Urayama, Syun-ichi, Fukudome, Akihito, Hirai, Miho, Okumura, Tomoyo, Nishimura, Yosuke, Takaki, Yoshihiro, Kurosawa, Norio, Koonin, Eugene V., Krupovic, Mart, Nunoura, Takuro

“…Metatranscriptome sequencing expanded the known diversity of the bacterial RNA virome, suggesting that additional riboviruses infecting bacterial hosts remain…”
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Arabidopsis C-terminal domain phosphatase-like 1 functions in miRNA accumulation and DNA methylation by Jeong, In Sil, Aksoy, Emre, Fukudome, Akihito, Akhter, Salina, Hiraguri, Akihiro, Fukuhara, Toshiyuki, Bahk, Jeong Dong, Koiwa, Hisashi

“…Arabidopsis CTD-PHOSPHATASE-LIKE 1 (CPL1) is a protein phosphatase that can dephosphorylate RNA polymerase II C-terminal domain (CTD). Unlike typical…”
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Regulation of abiotic stress signalling by Arabidopsis C-terminal domain phosphatase-like 1 requires interaction with a k-homology domain-containing protein by Jeong, In Sil, Fukudome, Akihito, Aksoy, Emre, Bang, Woo Young, Kim, Sewon, Guan, Qingmei, Bahk, Jeong Dong, May, Kimberly A, Russell, William K, Zhu, Jianhua, Koiwa, Hisashi

“…Arabidopsis thaliana CARBOXYL-TERMINAL DOMAIN (CTD) PHOSPHATASE-LIKE 1 (CPL1) regulates plant transcriptional responses to diverse stress signals. Unlike…”
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Correction: Regulation of Abiotic Stress Signalling by Arabidopsis C-Terminal Domain Phosphatase-Like 1 Requires Interaction with a K-Homology Domain-Containing Protein by Jeong, In Sil, Fukudome, Akihito, Aksoy, Emre, Bang, Woo Young, Kim, Sewon, Guan, Qingmei, Bahk, Jeong Dong, May, Kimberly A, Russell, William K, Zhu, Jianhua, Koiwa, Hisashi

“…Different letters show significant differences between genotypes under Fe+ and Fe- conditions (p<0.05, one-way ANOVA followed by Tukey’s HSD post hoc test)…”
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Plant dicer-like proteins: double-stranded RNA-cleaving enzymes for small RNA biogenesis by Fukudome, Akihito, Fukuhara, Toshiyuki

“…Dicer, a double-stranded RNA (dsRNA)-specific endoribonuclease, plays an essential role in triggering both transcriptional and post-transcriptional gene…”
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Structure of RNA-dependent RNA Polymerase 2 (RDR2) and its implications for double-stranded RNA synthesis in gene silencing by Takagi, Yuichiro, Fukudome, Akihito

“…Abstract only…”
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Double-stranded RNA-binding protein DRB3 negatively regulates anthocyanin biosynthesis by modulating PAP1 expression in Arabidopsis thaliana by Sawano, Hikaru, Matsuzaki, Takuma, Usui, Tomoyuki, Tabara, Midori, Fukudome, Akihito, Kanaya, Akihiro, Tanoue, Daichi, Hiraguri, Akihiro, Horiguchi, Gorou, Ohtani, Misato, Demura, Taku, Kozaki, Toshinori, Ishii, Kazuo, Moriyama, Hiromitsu, Fukuhara, Toshiyuki

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Cytokinin-overinduced transcription factors and thalianol cluster genes in CARBOXYL-TERMINAL DOMAIN PHOSPHATASE-LIKE 4-silenced Arabidopsis roots during de novo shoot organogenesis by Fukudome, Akihito, Koiwa, Hisashi

“…Cytokinin (CK) is one of key phytohormones for de-differentiation and de novo organogenesis in plants. During the CK-mediated organogenesis not only genes in…”
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The coding sequence of firefly luciferase reporter gene affects specific hyperexpression in Arabidopsis thaliana cpl1 mutant by Koiwa, Hisashi, Fukudome, Akihito

“…Forward genetic screening of mutants using firefly luciferase (LUC) reporter gene became a standard practice in plant research. Such screenings frequently…”
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Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2 by Fukudome, Akihito, Singh, Jasleen, Mishra, Vibhor, Reddem, Eswar, Martinez-Marquez, Francisco, Wenzel, Sabine, Yan, Rui, Shiozaki, Momoko, Yu, Zhiheng, Wang, Joseph Che-Yen, Takagi, Yuichiro, Pikaard, Craig S.

“…RNA-dependent RNA polymerases play essential roles in RNA-mediated gene silencing in eukaryotes. In Arabidopsis, RNA-DEPENDENT RNA POLYMERASE 2 (RDR2)…”
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Silencing Arabidopsis CARBOXYL‐TERMINAL DOMAIN PHOSPHATASE‐LIKE 4 induces cytokinin‐oversensitive de novo shoot organogenesis by Fukudome, Akihito, Goldman, Jared S., Finlayson, Scott A., Koiwa, Hisashi

“…Summary De novo shoot organogenesis (DNSO) is a post‐embryonic development programme that has been widely exploited by plant biotechnology. DNSO is a…”
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Functional diversity of Medicago truncatula RNA polymerase II CTD phosphatase isoforms produced in the Arabidopsis thaliana superexpression platform by Fukudome, Akihito, Ishiga, Yasuhiro, Nagashima, Yukihiro, Davidson, Katherine H., Chou, Hsiu-An, Mysore, Kirankumar S., Koiwa, Hisashi

“…Medicago truncatula is a model system for legume plants, which has substantially expanded the genome relative to the prototypical model dicot plant,…”
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