Search Results - "Fukami(Kobayashi), Kaoru"

Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases by Asamizu, Erika, Ichihara, Hisako, Nakaya, Akihiro, Nakamura, Yasukazu, Hirakawa, Hideki, Ishii, Takahiro, Tamura, Takuro, Fukami-Kobayashi, Kaoru, Nakajima, Yukari, Tabata, Satoshi

“…The Plant Genome DataBase Japan (PGDBj, http://pgdbj.jp/?ln=en) is a portal website that aims to integrate plant genome-related information from databases…”
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Characterization of Folding Pathways of the Type-1 and Type-2 Periplasmic Binding Proteins MglB and ArgT by Kashiwagi, Kenji, Shiba, Kiyotaka, Fukami-Kobayashi, Kaoru, Noda, Tetsuo, Nishikawa, Ken, Noguchi, Hiroshi

“…The family of periplasmic binding proteins (PBPs) is believed to have arisen from a common ancestor and to have differentiated into two types. At first…”
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3B-20 GENOME TREE BASED ON THE DOMAIN-COMBINATION REPERTOIRE OF PROTEINS by FUKAMI-KOBAYASHI Kaoru, NISHIKAWA Ken

“…It is difficult to estimate a species tree from individual gene trees, because different genes often yield different trees. Recently some approaches based not…”
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Development of Full-Length cDNAs from Chinese Cabbage (Brassica rapa Subsp. pekinensis) and Identification of Marker Genes for Defence Response by HIROSHI, Abe, YOSHIHIRO, Narusaka, ISSEI, Sasaki, KATSUNORI, Hatakeyama, SADASU, Shin-I, MARI, Narusaka, KAORU, Fukami-Kobayashi, SATORU, Matsumoto, MASATOMO, Kobayashi

“…Arabidopsis belongs to the Brassicaceae family and plays an important role as a model plant for which researchers have developed fine-tuned genome resources…”
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Genomic Evolution of MHC Class I Region in Primates by Fukami-Kobayashi, Kaoru, Shiina, Takashi, Anzai, Tatsuya, Sano, Kazumi, Yamazaki, Masaaki, Inoko, Hidetoshi, Tateno, Yoshio, Ohta, Tomoko

“…To elucidate the origins of the MHC-B-MHC-C pair and the MHC class I chain-related molecule (MIC)A-MICB pair, we sequenced an MHC class I genomic region of…”
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Analysis of Multiple Occurrences of Alternative Splicing Events in Arabidopsis thaliana Using Novel Sequenced Full-Length cDNAs by Iida, Kei, Fukami-Kobayashi, Kaoru, Toyoda, Atsushi, Sakaki, Yoshiyuki, Kobayashi, Masatomo, Seki, Motoaki, Shinozaki, Kazuo

“…Alternative splicing (AS) is a mechanism by which multiple types of mature mRNAs are generated from a single pre-mature mRNA. In this study, we completely…”
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EVOLUTIONARY CHANGE OF TERTIARY STRUCTURE IN PERIPLASMIC BINDING PROTEIN SUPERFAMILIES by FUKAMI-KOBAYASHI Kaoru, SUYAMA Mikita, TATENO Yoshio, NISHIKAWA Ken

“…In the complete E. coli genome the largest family of paralogous proteins is the ABC transporter family. The ABC transporters couple the translocation of…”
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How to make good use of CLUSTALW by Fukami-Kobayashi, Kaoru, Saito, Nariya

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Construction and characterization of chimeric proteins composed of type-1 and type-2 periplasmic binding proteins MglB and ArgT by Kashiwagi, K. (Japanese Foundation for Cancer Research, Tokyo (Japan)), Fukami Kobayashi, K, Shiba, K, Nishikawa, K

“…The respective type-1 and type-2 periplasmic binding proteins (PBPs) MglB and ArgT are believed to have evolved from a common ancestor into siblings showing…”
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A NEW MODULE ORGANIZATION OF HEMOGLOBIN AND ITS RELATIONSHIP WITH INTRONS by SHIONYU Masafumi, SATO Yoko, FUKAMI-KOBAYASHI Kaoru, MIZUTANI Masateru, YURA Kei, GO Mitiko

“…Correlation between protein modules and intron positions was first observed in hemoglobin. Modules are small compact structures within globular proteins. When…”
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SABRE2: a database connecting plant EST/full-length cDNA clones with Arabidopsis information by Fukami-Kobayashi, Kaoru, Nakamura, Yasukazu, Tamura, Takuro, Kobayashi, Masatomo

“…The SABRE (Systematic consolidation of Arabidopsis and other Botanical REsources) database cross-searches plant genetic resources through publicly available…”
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Reminder to deposit DNA sequences by Blaxter, Mark, Danchin, Antoine, Savakis, Babis, Fukami-Kobayashi, Kaoru, Kurokawa, Ken, Sugano, Sumio, Roberts, Richard J., Salzberg, Steven L., Wu, Chung-I

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Domain dislocation: a change of core structure in periplasmic binding proteins in their evolutionary history by Fukami-Kobayashi, Kaoru, Tateno, Yoshio, Nishikawa, Ken

“…Periplasmic binding proteins (PBPs) serve as receptors for various water-soluble ligands in ATP-binding cassette (ABC) transport systems, and form one of the…”
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CAMUS DB for Amino Acid Sequence Data by Misu, Sadahiko, Iizu, Takayasu, Kawanishi, Yuichi, Fukami(Kobayashi), Kaoru, Saitou, Naruya

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A Tree of Life Based on Protein Domain Organizations by Fukami-Kobayashi, Kaoru, Minezaki, Yoshiaki, Tateno, Yoshio, Nishikawa, Ken

“…It is desirable to estimate a tree of life, a species tree including all available species in the 3 superkingdoms, Archaea, Bacteria, and Eukaryota, using not…”
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NBRP databases: databases of biological resources in Japan by Yamazaki, Yukiko, Akashi, Ryo, Banno, Yutaka, Endo, Takashi, Ezura, Hiroshi, Fukami-Kobayashi, Kaoru, Inaba, Kazuo, Isa, Tadashi, Kamei, Katsuhiko, Kasai, Fumie, Kobayashi, Masatomo, Kurata, Nori, Kusaba, Makoto, Matuzawa, Tetsuro, Mitani, Shohei, Nakamura, Taro, Nakamura, Yukio, Nakatsuji, Norio, Naruse, Kiyoshi, Niki, Hironori, Nitasaka, Eiji, Obata, Yuichi, Okamoto, Hitoshi, Okuma, Moriya, Sato, Kazuhiro, Serikawa, Tadao, Shiroishi, Toshihiko, Sugawara, Hideaki, Urushibara, Hideko, Yamamoto, Masatoshi, Yaoita, Yoshio, Yoshiki, Atsushi, Kohara, Yuji

“…The National BioResource Project (NBRP) is a Japanese project that aims to establish a system for collecting, preserving and providing bioresources for use as…”
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Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins by Fukami-Kobayashi, Kaoru, Tateno, Yoshio, Nishikawa, Ken

“…The bacterial LacI/GalR family repressors such as lactose operon repressor (LacI), purine nucleotide synthesis repressor (PurR), and trehalose operon repressor…”
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RIKEN integrated database of mammals by Masuya, Hiroshi, Makita, Yuko, Kobayashi, Norio, Nishikata, Koro, Yoshida, Yuko, Mochizuki, Yoshiki, Doi, Koji, Takatsuki, Terue, Waki, Kazunori, Tanaka, Nobuhiko, Ishii, Manabu, Matsushima, Akihiro, Takahashi, Satoshi, Hijikata, Atsushi, Kozaki, Kouji, Furuichi, Teiichi, Kawaji, Hideya, Wakana, Shigeharu, Nakamura, Yukio, Yoshiki, Atsushi, Murata, Takehide, Fukami-Kobayashi, Kaoru, Mohan, Sujatha, Ohara, Osamu, Hayashizaki, Yoshihide, Mizoguchi, Riichiro, Obata, Yuichi, Toyoda, Tetsuro

“…The RIKEN integrated database of mammals (http://scinets.org/db/mammal) is the official undertaking to integrate its mammalian databases produced from multiple…”
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SAKURA: A New Data Submission System of DDBJ to Meet Users' Needs in the Age of Mass Production of DNA Sequences by Yamamoto, Hikaru, Tamura, Takuro, Isono, Katsumi, Gojobori, Takashi, Sugawara, Hideaki, Nishikawa, Ken, Saitou, Naruya, Imanishi, Tadashi, Fukami(Kobayashi), Kaoru, Ikeo, Kazuho

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Ancient divergence of long and short isoforms of adenylate kinase molecular evolution of the nucleoside monophosphate kinase family by Fukami-Kobayashi, Kaoru, Nosaka, Michiko, Nakazawa, Atsushi, Gō, Mitiko

“…Adenylate kinases (AK) from vertebrates are separated into three isoforms, AK1, AK2 and AK3, based on structure, subcellular localization and substrate…”
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