Search Results - "Fromm, Bastian"

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome by Fromm, Bastian, Billipp, Tyler, Peck, Liam E, Johansen, Morten, Tarver, James E, King, Benjamin L, Newcomb, James M, Sempere, Lorenzo F, Flatmark, Kjersti, Hovig, Eivind, Peterson, Kevin J

“…Although microRNAs (miRNAs) are among the most intensively studied molecules of the past 20 years, determining what is and what is not a miRNA has not been…”
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Identification of non-invasive miRNAs biomarkers for prostate cancer by deep sequencing analysis of urinary exosomes by Rodríguez, Marta, Bajo-Santos, Cristina, Hessvik, Nina P, Lorenz, Susanne, Fromm, Bastian, Berge, Viktor, Sandvig, Kirsten, Linē, Aija, Llorente, Alicia

“…The aim of this study was to identify microRNAs in urinary exosomes that are differently expressed in prostate cancer patients and healthy donors. For this…”
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RNAcentral 2021: secondary structure integration, improved sequence search and new member databases by Sweeney, Blake A, Petrov, Anton I, Ribas, Carlos E, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Seemann, Stefan E, Gorodkin, Jan, Cannone, Jamie J, Gutell, Robin R, Kay, Simon, Marygold, Steven, dos Santos, Gil, Frankish, Adam, Mudge, Jonathan M, Barshir, Ruth, Fishilevich, Simon, Chan, Patricia P, Lowe, Todd M, Seal, Ruth, Bruford, Elspeth, Panni, Simona, Porras, Pablo, Karagkouni, Dimitra, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Volders, Pieter-Jan, Mestdagh, Pieter, Griffiths-Jones, Sam, Fromm, Bastian, Peterson, Kevin J, Kalvari, Ioanna, Nawrocki, Eric P, Petrov, Anton S, Weng, Shuai, Bouchard-Bourelle, Philia, Scott, Michelle, Lui, Lauren M, Hoksza, David, Lovering, Ruth C, Kramarz, Barbara, Mani, Prita, Ramachandran, Sridhar, Weinberg, Zasha

“…Abstract RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that provides a single access point to 44 RNA resources and >18 million…”
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Atp8 is in the ground pattern of flatworm mitochondrial genomes by Egger, Bernhard, Bachmann, Lutz, Fromm, Bastian

“…To date, mitochondrial genomes of more than one hundred flatworms (Platyhelminthes) have been sequenced. They show a high degree of similarity and a strong…”
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Common diseases alter the physiological age-related blood microRNA profile by Fehlmann, Tobias, Lehallier, Benoit, Schaum, Nicholas, Hahn, Oliver, Kahraman, Mustafa, Li, Yongping, Grammes, Nadja, Geffers, Lars, Backes, Christina, Balling, Rudi, Kern, Fabian, Krüger, Rejko, Lammert, Frank, Ludwig, Nicole, Meder, Benjamin, Fromm, Bastian, Maetzler, Walter, Berg, Daniela, Brockmann, Kathrin, Deuschle, Christian, von Thaler, Anna-Katharina, Eschweiler, Gerhard W., Milman, Sofiya, Barziliai, Nir, Reichert, Matthias, Wyss-Coray, Tony, Meese, Eckart, Keller, Andreas

“…Aging is a key risk factor for chronic diseases of the elderly. MicroRNAs regulate post-transcriptional gene silencing through base-pair binding on their…”
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Rapid adaptation of cellular metabolic rate to the MicroRNA complements of mammals and its relevance to the evolution of endothermy by Fromm, Bastian, Sorger, Thomas

“…The metabolic efficiency of mammalian cells depends on the attenuation of intrinsic translation noise by microRNAs. We devised a metric of cellular metabolic…”
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miRTrace reveals the organismal origins of microRNA sequencing data by Kang, Wenjing, Eldfjell, Yrin, Fromm, Bastian, Estivill, Xavier, Biryukova, Inna, Friedländer, Marc R

“…We present here miRTrace, the first algorithm to trace microRNA sequencing data back to their taxonomic origins. This is a challenge with profound implications…”
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Base-pair conformational switch modulates miR-34a targeting of Sirt1 mRNA by Baronti, Lorenzo, Guzzetti, Ileana, Ebrahimi, Parisa, Friebe Sandoz, Sarah, Steiner, Emilie, Schlagnitweit, Judith, Fromm, Bastian, Silva, Luis, Fontana, Carolina, Chen, Alan A., Petzold, Katja

“…MicroRNAs (miRNAs) regulate the levels of translation of messenger RNAs (mRNAs). At present, the major parameter that can explain the selection of the target…”
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MirGeneDB 2.1: toward a complete sampling of all major animal phyla by Fromm, Bastian, Høye, Eirik, Domanska, Diana, Zhong, Xiangfu, Aparicio-Puerta, Ernesto, Ovchinnikov, Vladimir, Umu, Sinan U, Chabot, Peter J, Kang, Wenjing, Aslanzadeh, Morteza, Tarbier, Marcel, Mármol-Sánchez, Emilio, Urgese, Gianvito, Johansen, Morten, Hovig, Eivind, Hackenberg, Michael, Friedländer, Marc R, Peterson, Kevin J

“…Abstract We describe an update of MirGeneDB, the manually curated microRNA gene database. Adhering to uniform and consistent criteria for microRNA annotation…”
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The microRNA toolkit of insects by Ylla, Guillem, Fromm, Bastian, Piulachs, Maria-Dolors, Belles, Xavier

“…Is there a correlation between miRNA diversity and levels of organismic complexity? Exhibiting extraordinary levels of morphological and developmental…”
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Insights into early animal evolution from the genome of the xenacoelomorph worm Xenoturbella bocki by Schiffer, Philipp H, Natsidis, Paschalis, Leite, Daniel J, Robertson, Helen E, Lapraz, François, Marlétaz, Ferdinand, Fromm, Bastian, Baudry, Liam, Simpson, Fraser, Høye, Eirik, Zakrzewski, Anne C, Kapli, Paschalia, Hoff, Katharina J, Müller, Steven, Marbouty, Martial, Marlow, Heather, Copley, Richard R, Koszul, Romain, Sarkies, Peter, Telford, Maximilian J

“…The evolutionary origins of Bilateria remain enigmatic. One of the more enduring proposals highlights similarities between a cnidarian-like planula larva and…”
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MapToCleave: High-throughput profiling of microRNA biogenesis in living cells by Kang, Wenjing, Fromm, Bastian, Houben, Anna J., Høye, Eirik, Bezdan, Daniela, Arnan, Carme, Thrane, Kim, Asp, Michaela, Johnson, Rory, Biryukova, Inna, Friedländer, Marc R.

“…Previous large-scale studies have uncovered many features that determine the processing of microRNA (miRNA) precursors; however, they have been conducted…”
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Unicellular Origin of the Animal MicroRNA Machinery by Bråte, Jon, Neumann, Ralf S., Fromm, Bastian, Haraldsen, Arthur A.B., Tarver, James E., Suga, Hiroshi, Donoghue, Philip C.J., Peterson, Kevin J., Ruiz-Trillo, Iñaki, Grini, Paul E., Shalchian-Tabrizi, Kamran

“…The emergence of multicellular animals was associated with an increase in phenotypic complexity and with the acquisition of spatial cell differentiation and…”
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A comparative analysis of heart microRNAs in vertebrates brings novel insights into the evolution of genetic regulatory networks by Nachtigall, Pedro G, Bovolenta, Luiz A, Patton, James G, Fromm, Bastian, Lemke, Ney, Pinhal, Danillo

“…During vertebrate evolution, the heart has undergone remarkable changes that lead to morphophysiological differences in the fully formed heart of these…”
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Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development by Malkani, Sherina, Chin, Christopher R., Cekanaviciute, Egle, Mortreux, Marie, Okinula, Hazeem, Tarbier, Marcel, Schreurs, Ann-Sofie, Shirazi-Fard, Yasaman, Tahimic, Candice G.T., Rodriguez, Deyra N., Sexton, Brittany S., Butler, Daniel, Verma, Akanksha, Bezdan, Daniela, Durmaz, Ceyda, MacKay, Matthew, Melnick, Ari, Meydan, Cem, Li, Sheng, Garrett-Bakelman, Francine, Fromm, Bastian, Afshinnekoo, Ebrahim, Langhorst, Brad W., Dimalanta, Eileen T., Cheng-Campbell, Margareth, Blaber, Elizabeth, Schisler, Jonathan C., Vanderburg, Charles, Friedländer, Marc R., McDonald, J. Tyson, Costes, Sylvain V., Rutkove, Seward, Grabham, Peter, Mason, Christopher E., Beheshti, Afshin

“…We have identified and validated a spaceflight-associated microRNA (miRNA) signature that is shared by rodents and humans in response to simulated,…”
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Exploration of extracellular vesicles from Ascaris suum provides evidence of parasite-host cross talk by Hansen, Eline P., Fromm, Bastian, Andersen, Sidsel D., Marcilla, Antonio, Andersen, Kasper L., Borup, Anne, Williams, Andrew R., Jex, Aaron R., Gasser, Robin B., Young, Neil D., Hall, Ross S., Stensballe, Allan, Ovchinnikov, Vladimir, Yan, Yan, Fredholm, Merete, Thamsborg, Stig M., Nejsum, Peter

“…The prevalent porcine helminth, Ascaris suum, compromises pig health and reduces farm productivity worldwide. The closely related human parasite, A…”
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Large scale changes in the transcriptome of Eisenia fetida during regeneration by Bhambri, Aksheev, Dhaunta, Neeraj, Patel, Surendra Singh, Hardikar, Mitali, Bhatt, Abhishek, Srikakulam, Nagesh, Shridhar, Shruti, Vellarikkal, Shamsudheen, Pandey, Rajesh, Jayarajan, Rijith, Verma, Ankit, Kumar, Vikram, Gautam, Pradeep, Khanna, Yukti, Khan, Jameel Ahmed, Fromm, Bastian, Peterson, Kevin J, Scaria, Vinod, Sivasubbu, Sridhar, Pillai, Beena

“…Earthworms show a wide spectrum of regenerative potential with certain species like Eisenia fetida capable of regenerating more than two-thirds of their body…”
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A proteomic approach for studying insect phylogeny: CAPA peptides of ancient insect taxa (Dictyoptera, Blattoptera) as a test case by Roth, Steffen, Fromm, Bastian, Gäde, Gerd, Predel, Reinhard

“…Neuropeptide ligands have to fit exactly into their respective receptors and thus the evolution of the coding regions of their genes is constrained and may be…”
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A renaissance of microRNAs as taxonomic and phylogenetic markers in animals by Fromm, Bastian

“…Molecular markers for tracing animal sample origins and compositions are critical for applications such as parasite detection, contamination screening, and…”
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Evolutionary Implications of the microRNA- and piRNA Complement of Lepidodermella squamata (Gastrotricha) by Fromm, Bastian, Tosar, Juan Pablo, Aguilera, Felipe, Friedländer, Marc R, Bachmann, Lutz, Hejnol, Andreas

“…Gastrotrichs-'hairy bellies'-are microscopic free-living animals inhabiting marine and freshwater habitats. Based on morphological and early molecular…”
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