Search Results - "Frid, Yelena"

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  1. 1
    An improved Four-Russians method and sparsified Four-Russians algorithm for RNA folding

    An improved Four-Russians method and sparsified Four-Russians algorithm for RNA folding by Frid, Yelena, Gusfield, Dan

    Published in Algorithms for molecular biology (05-08-2016)
    “…The basic RNA secondary structure prediction problem or single sequence folding problem (SSF) was solved 35 years ago by a now well-known [Formula: see…”
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  2. 2
    Faster algorithms for RNA-folding using the Four-Russians method

    Faster algorithms for RNA-folding using the Four-Russians method by Venkatachalam, Balaji, Gusfield, Dan, Frid, Yelena

    Published in Algorithms for molecular biology (06-03-2014)
    “…The secondary structure that maximizes the number of non-crossing matchings between complimentary bases of an RNA sequence of length n can be computed in O(n3)…”
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  3. 3
    A simple, practical and complete O(n3/log n)-time algorithm for RNA folding using the Four-Russians speedup

    A simple, practical and complete O(n3/log n)-time algorithm for RNA folding using the Four-Russians speedup by Frid, Yelena, Gusfield, Dan

    Published in Algorithms for molecular biology (04-01-2010)
    “…The problem of computationally predicting the secondary structure (or folding) of RNA molecules was first introduced more than thirty years ago and yet…”
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  4. 4
    A simple, practical and complete O graphic file="1748-7188-5-13-i1.gif"/>-time Algorithm for RNA folding using the Four-Russians Speedup

    A simple, practical and complete O graphic file="1748-7188-5-13-i1.gif"/>-time Algorithm for RNA folding using the Four-Russians Speedup by Gusfield Dan, Frid Yelena

    Published in Algorithms for molecular biology (01-01-2010)
    “…Abstract Background The problem of computationally predicting the secondary structure (or folding) of RNA molecules was first introduced more than thirty years…”
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  5. 5
    Worst-Case and Practical Speedups of RNA Secondary Structure Prediction Algorithms Using the Four-Russians Method

    Worst-Case and Practical Speedups of RNA Secondary Structure Prediction Algorithms Using the Four-Russians Method by Frid, Yelena

    Published 01-01-2014
    “…Non-coding RNA (ncRNA) affect many aspects of gene expression; regulation of epigenetic processes, transcription, splicing, and translation. It has been…”
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  6. 6
    Worst-Case and Practical Speedups of RNA Secondary Structure Prediction Algorithms Using the Four-Russians Method

    Worst-Case and Practical Speedups of RNA Secondary Structure Prediction Algorithms Using the Four-Russians Method by Frid, Yelena

    “…Non-coding RNA (ncRNA) affect many aspects of gene expression; regulation of epigenetic processes, transcription, splicing, and translation. It has been…”
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    Dissertation
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  7. 7
    Faster Algorithms for RNA-folding using the Four-Russians method

    Faster Algorithms for RNA-folding using the Four-Russians method by Venkatachalam, Balaji, Gusfield, Dan, Frid, Yelena

    Published 30-07-2013
    “…The secondary structure that maximizes the number of non-crossing matchings between complimentary bases of an RNA sequence of length n can be computed in…”
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