Search Results - "Freese, Nowlan H."

Integrated genome browser: visual analytics platform for genomics by Freese, Nowlan H, Norris, David C, Loraine, Ann E

“…Genome browsers that support fast navigation through vast datasets and provide interactive visual analytics functions can help scientists achieve deeper…”
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Sp6/Epiprofin is a master regulator in the developing tooth by Rhodes, Craig S., Yoshitomi, Yasuo, Burbelo, Peter D., Freese, Nowlan H., Nakamura, Takashi, Chiba, Yuta, Yamada, Yoshihiko

“…Tooth development involves the coordinated transcriptional regulation of extracellular matrix proteins produced by ameloblasts and odontoblasts. In this study,…”
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An ‘eFP‐Seq Browser’ for visualizing and exploring RNA sequencing data by Sullivan, Alexander, Purohit, Priyank K., Freese, Nowlan H., Pasha, Asher, Esteban, Eddi, Waese, Jamie, Wu, Alison, Chen, Michelle, Chin, Chih Y., Song, Richard, Watharkar, Sneha R., Chan, Agnes P., Krishnakumar, Vivek, Vaughn, Matthew W., Town, Chris, Loraine, Ann E., Provart, Nicholas J.

“…Summary Improvements in next‐generation sequencing technologies have resulted in dramatically reduced sequencing costs. This has led to an explosion of…”
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Discovery of genomic variations by whole-genome resequencing of the North American Araucana chicken by Noorai, Rooksana E, Shankar, Vijay, Freese, Nowlan H, Gregorski, Christopher M, Chapman, Susan C

“…Gallus gallus (chicken) is phenotypically diverse, with over 60 recognized breeds, among the myriad species within the Aves lineage. Domestic chickens have…”
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Whole genome bisulfite sequencing of Medicago truncatula A17 wild type and lss mutants by Freese, Nowlan H, Schnabel, Elise L, Frugoli, Julia A

“…Earlier work in our lab identified a spontaneous mutant (likesunnsupernodulator-lss) in Medicago truncatula, resulting in increased nodulation. Molecular…”
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Genome-wide association mapping and identification of candidate genes for the rumpless and ear-tufted traits of the Araucana chicken by Noorai, Rooksana E, Freese, Nowlan H, Wright, Lindsay M, Chapman, Susan C, Clark, Leigh Anne

“…Araucana chickens are known for their rounded, tailless rumps and tufted ears. Inheritance studies have shown that the rumpless (Rp) and ear-tufted (Et) loci…”
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A novel gain-of-function mutation of the proneural IRX1 and IRX2 genes disrupts axis elongation in the Araucana rumpless chicken by Freese, Nowlan H, Lam, Brianna A, Staton, Meg, Scott, Allison, Chapman, Susan C

“…Axis elongation of the vertebrate embryo involves the generation of cell lineages from posterior progenitor populations. We investigated the molecular…”
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BioViz Connect : Web Application Linking CyVerse Cloud Resources to Genomic Visualization in the Integrated Genome Browser by Raveendran, Karthik, Freese, Nowlan H, Kintali, Chaitanya, Tiwari, Srishti, Bole, Pawan, Dias, Chester, Loraine, Ann E

“…Genomics researchers do better work when they can interactively explore and visualize data. Due to the vast size of experimental datasets, researchers are…”
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Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing by Freese, Nowlan H., Estrada, April R., Blakley, Ivory C., Duan, Jinjie, Loraine, Ann E.

“…Alternatively spliced genes produce multiple spliced isoforms, called transcript variants. In differential alternative splicing, transcript variant abundance…”
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Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR by Estrada, April D, Freese, Nowlan H, Blakley, Ivory C, Loraine, Ann E

“…Alternative splicing enables a single gene to produce multiple mRNA isoforms by varying splice site selection. In animals, alternative splicing of mRNA…”
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AINTEGUMENTA and AINTEGUMENTA-LIKE6 directly regulate floral homeotic, growth, and vascular development genes in young Arabidopsis flowers by Krizek, Beth A, Bantle, Alexis T, Heflin, Jorman M, Han, Han, Freese, Nowlan H, Loraine, Ann E

“…Arabidopsis ANT and AIL6 directly regulate genes involved in different aspects of early flower development including genes that specify floral organ identity…”
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ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins by Mall, Tarun, Eckstein, John, Norris, David, Vora, Hiral, Freese, Nowlan H, Loraine, Ann E

“…One gene can produce multiple transcript variants encoding proteins with different functions. To facilitate visual analysis of transcript variants, we…”
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Integrated Genome Browser App Store by Shanbhag, Sameer, Patil, Riddhi, Zahara, Noor, Shetty, Chirag, Weidenhammer, Rachel, Watharkar, Sneha, Tambvekar, Pranav, Badzuh, Philip P, Dias, Chester, Vankayala, Narendra, Kulkarni, Prutha, Vallapureddy, Charan, Kulkarni, Shamika, Nikhare, Pooja, Freese, Nowlan H, Loraine, Ann E

“…Abstract Summary Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and…”
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Premature downregulation of Tbx6 within the tailbud alters cell fates and leads to premature termination of axial elongation by Freese, Nowlan H., Scott, Allison, Chapman, Susan

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A Novel Gain-Of-Function Mutation of the Proneural IRX1 and IRX2 Genes Disrupts Axis Elongation in the Araucana Rumpless Chicken: e112364 by Freese, Nowlan H, Lam, Brianna A, Staton, Meg, Scott, Allison, Chapman, Susan C

“…Axis elongation of the vertebrate embryo involves the generation of cell lineages from posterior progenitor populations. We investigated the molecular…”
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