Search Results - "Foulk, Michael"

Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins by Foulk, Michael S, Urban, John M, Casella, Cinzia, Gerbi, Susan A

“…Nascent strand sequencing (NS-seq) is used to discover DNA replication origins genome-wide, allowing identification of features for their specification. NS-seq…”
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High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing by Urban, John M, Foulk, Michael S, Bliss, Jacob E, Coleman, C Michelle, Lu, Nanyan, Mazloom, Reza, Brown, Susan J, Spradling, Allan C, Gerbi, Susan A

“…The lower Dipteran fungus fly, Sciara coprophila, has many unique biological features that challenge the rule of genome DNA constancy. For example, Sciara…”
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Anatomy and evolution of a DNA replication origin by Yamamoto, Yutaka, Gustafson, Eric A., Foulk, Michael S., Smith, Heidi S., Gerbi, Susan A.

“…DNA amplification occurs at the DNA puff II/9A locus in the fungus fly Sciara coprophila . As a foundation to study the molecular mechanism for the initiating…”
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The hunt for origins of DNA replication in multicellular eukaryotes by Urban, John M, Foulk, Michael S, Casella, Cinzia, Gerbi, Susan A

“…Origins of DNA replication (ORIs) occur at defined regions in the genome. Although DNA sequence defines the position of ORIs in budding yeast, the factors for…”
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The ecdysone receptor (ScEcR-A) binds DNA puffs at the start of DNA amplification in Sciara coprophila by Liew, Gerald M., Foulk, Michael S., Gerbi, Susan A.

“…The steroid hormone ecdysone induces DNA amplification and subsequent DNA puff formation in late fourth larval instar salivary gland polytene chromosomes of…”
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Isolation and characterization of the ecdysone receptor and its heterodimeric partner ultraspiracle through development in Sciara coprophila by Foulk, Michael S, Waggener, John M, Johnson, Janell M, Yamamoto, Yutaka, Liew, Gerald M, Urnov, Fyodor D, Young, Yuki, Lee, Genee, Smith, Heidi S, Gerbi, Susan A

“…Regulation of DNA replication is critical, and loss of control can lead to DNA amplification. Naturally occurring, developmentally regulated DNA amplification…”
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Ecdysone induces transcription and amplification in Sciara coprophila DNA puff II/9A by Foulk, Michael S., Liang, Chun, Wu, Nan, Blitzblau, Hannah G., Smith, Heidi, Alam, Daniel, Batra, Maneesh, Gerbi, Susan A.

“…DNA replication is normally tightly regulated to ensure the production of only one copy of the genome per cell cycle. However, DNA puffs of the salivary gland…”
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Phytobilin biosynthesis: the Synechocystis sp. PCC 6803 heme oxygenase-encoding ho1 gene complements a phytochrome-deficient Arabidopsis thaliana hy1 mutant by Willows, Robert D, Mayer, Sandra M, Foulk, Michael S, Delong, Alison, Hanson, Kimberly, Chory, Joanne, Beale, Samuel I

“…The phytobilin chromophores of phycobiliproteins and phytochromes are biosynthesized from heme in a pathway that begins with the opening of the tetrapyrrole…”
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Mapping DNA replication origins in the human genome by Gerbi, Susan A., Urban, John, Foulk, Michael

“…Abstract only We will present our results using nascent strand sequencing (NS‐Seq) to map DNA replication origins in the human genome. Nascent DNA strands were…”
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Re‐replication Origins in Sciara DNA Puffs Revealed by New and Old Genomic Technologies including Nanopore Sequencing by Urban, John, Bashir, Ali, Sebra, Robert, Foulk, Michael, Howison, Mark, Gerbi, Susan

“…Abstract only Each one of the numerous origins of DNA replication (ORIs) in metazoan genomes is typically regulated to fire no more than once in any given…”
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