Search Results - "Foster, Bryce"

DOE JGI Metagenome Workflow by Clum, Alicia, Huntemann, Marcel, Bushnell, Brian, Foster, Brian, Foster, Bryce, Roux, Simon, Hajek, Patrick P, Varghese, Neha, Mukherjee, Supratim, Reddy, T B K, Daum, Chris, Yoshinaga, Yuko, O'Malley, Ronan, Seshadri, Rekha, Kyrpides, Nikos C, Eloe-Fadrosh, Emiley A, Chen, I-Min A, Copeland, Alex, Ivanova, Natalia N

“…The DOE Joint Genome Institute (JGI) Metagenome Workflow performs metagenome data processing, including assembly; structural, functional, and taxonomic…”
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Impact of Soil Salinity on the Cowpea Nodule-Microbiome and the Isolation of Halotolerant PGPR Strains to Promote Plant Growth under Salinity Stress by Mukhtar, Salma, Hirsch, Ann M., Khan, Noor, Malik, Kauser A., Humm, Ethan A., Pellegrini, Matteo, Shi, Baochen, Briscoe, Leah, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T.B.K., Daum, Chris, Copeland, Alex, Ivanova, Natalia N., Kyrpides, Nikos C., Shapiro, Nicole, Eloe-Fadrosh, Emiley A., Maymon, Maskit, Mirza, Muhammad S., Mehnaz, Samina

“…Cowpea is one of the major legumes cultivated in arid and semiarid regions of the world. Four soil-microbial samples (SS-1 through SS-4) collected from…”
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First report of Botrytis cinerea in South African blueberry orchards by Foster, Bryce J., Wilson, Ida, Jacobs, Karin

“…The South African blueberry industry has grown consistently over the past few years due to an increase in local and international demand. Like many other…”
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HOPE: A genetic algorithm for the unequal area facility layout problem by Kochhar, Jasmit Singh, Foster, Bryce T., Heragu, Sunderesh S.

“…The paper discusses the application of an evolutionary computation technique for the design of efficient facilities. Genetic algorithms (GA) have been applied…”
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters by Udwary, Daniel W, Doering, Drew T, Foster, Bryce, Smirnova, Tatyana, Kautsar, Satria A, Mouncey, Nigel J

“…Abstract Secondary metabolites are small molecules produced by all corners of life, often with specialized bioactive functions with clinical and environmental…”
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The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole by Martin, Kara, Schmidt, Katrin, Toseland, Andrew, Boulton, Chris A., Barry, Kerrie, Beszteri, Bánk, Brussaard, Corina P. D., Clum, Alicia, Daum, Chris G., Eloe-Fadrosh, Emiley, Fong, Allison, Foster, Brian, Foster, Bryce, Ginzburg, Michael, Huntemann, Marcel, Ivanova, Natalia N., Kyrpides, Nikos C., Lindquist, Erika, Mukherjee, Supratim, Palaniappan, Krishnaveni, Reddy, T. B. K., Rizkallah, Mariam R., Roux, Simon, Timmermans, Klaas, Tringe, Susannah G., van de Poll, Willem H., Varghese, Neha, Valentin, Klaus U., Lenton, Timothy M., Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent, Mock, Thomas

“…Eukaryotic phytoplankton are responsible for at least 20% of annual global carbon fixation. Their diversity and activity are shaped by interactions with…”
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Multiomics in the central Arctic Ocean for benchmarking biodiversity change by Mock, Thomas, Boulton, William, Balmonte, John-Paul, Barry, Kevin, Bertilsson, Stefan, Bowman, Jeff, Buck, Moritz, Bratbak, Gunnar, Chamberlain, Emelia J, Cunliffe, Michael, Creamean, Jessie, Ebenhöh, Oliver, Eggers, Sarah Lena, Fong, Allison A, Gardner, Jessie, Gradinger, Rolf, Granskog, Mats A, Havermans, Charlotte, Hill, Thomas, Hoppe, Clara J. M, Korte, Kerstin, Larsen, Aud, Müller, Oliver, Nicolaus, Anja, Oldenburg, Ellen, Popa, Ovidiu, Rogge, Swantje, Schäfer, Hendrik, Shoemaker, Katyanne, Snoeijs-Leijonmalm, Pauline, Torstensson, Anders, Valentin, Klaus, Vader, Anna, Barry, Kerrie, Chen, I.-M. A, Clum, Alicia, Copeland, Alex, Daum, Chris, Eloe-Fadrosh, Emiley, Foster, Brian, Foster, Bryce, Grigoriev, Igor V, Huntemann, Marcel, Ivanova, Natalia, Kuo, Alan, Kyrpides, Nikos C, Mukherjee, Supratim, Palaniappan, Krishnaveni, Reddy, T. B. K, Salamov, Asaf, Roux, Simon, Varghese, Neha, Woyke, Tanja, Wu, Dongying, Leggett, Richard M, Moulton, Vincent, Metfies, Katja

“…Multiomics approaches need to be applied in the central Arctic Ocean to benchmark biodiversity change and to identify novel species and their genes. As part of…”
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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota by Oliver, Tiffany, Varghese, Neha, Roux, Simon, Schulz, Frederik, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Riley, Robert, LaButti, Kurt, Egan, Robert, Hajek, Patrick, Mukherjee, Supratim, Ovchinnikova, Galina, Reddy, T. B. K., Calhoun, Sara, Hayes, Richard D., Rohwer, Robin R., Zhou, Zhichao, Daum, Chris, Copeland, Alex, Chen, I-Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Mouncey, Nigel J., del Rio, Tijana Glavina, Grigoriev, Igor V., Hofmeyr, Steven, Oliker, Leonid, Yelick, Katherine, Anantharaman, Karthik, McMahon, Katherine D., Woyke, Tanja, Eloe-Fadrosh, Emiley A.

“…The North Temperate Lakes Long-Term Ecological Research (NTL-LTER) program has been extensively used to improve understanding of how aquatic ecosystems respond…”
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The role of zinc in the adaptive evolution of polar phytoplankton by Ye, Naihao, Han, Wentao, Toseland, Andrew, Wang, Yitao, Fan, Xiao, Xu, Dong, van Oosterhout, Cock, Grigoriev, Igor V., Tagliabue, Alessandro, Zhang, Jian, Zhang, Yan, Ma, Jian, Qiu, Huan, Li, Youxun, Zhang, Xiaowen, Mock, Thomas

“…Zinc is an essential trace metal for oceanic primary producers with the highest concentrations in polar oceans. However, its role in the biological functioning…”
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Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom by Nowinski, Brent, Smith, Christa B., Thomas, Courtney M., Esson, Kaitlin, Marin, Roman, Preston, Christina M., Birch, James M., Scholin, Christopher A., Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I.-Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Glavina del Rio, Tijana, Whitman, William B., Kiene, Ronald P., Eloe-Fadrosh, Emiley A., Moran, Mary Ann

“…Metagenomic and metatranscriptomic time-series data covering a 52-day period in the fall of 2016 provide an inventory of bacterial and archaeal community…”
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria by Ward, Ryan D, Stajich, Jason E, Johansen, Jeffrey R, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K, Daum, Chris, Copeland, Alex, Chen, I.-M. A, Ivanova, Natalia N, Kyrpides, Nikos C, Shapiro, Nicole, Eloe-Fadrosh, Emiley A, Pietrasiak, Nicole

“…Cyanobacteria are ubiquitous microorganisms with crucial ecosystem functions, yet most knowledge of their biology relates to aquatic taxa. We have constructed…”
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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert by Nguyen, Thuy M, Pombubpa, Nuttapon, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T B K, Daum, Chris, Copeland, Alex, Chen, I-Min A, Ivanova, Natalia N, Kyrpides, Nikos C, Harmon-Smith, Miranda, Eloe-Fadrosh, Emiley A, Pietrasiak, Nicole, Stajich, Jason E, Hom, Erik F Y

“…We present six whole community shotgun metagenomic sequencing data sets of two types of biological soil crusts sampled at the ecotone of the Mojave Desert and…”
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Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting by Nguyen, Thuy M, Pombubpa, Nuttapon, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T B K, Daum, Chris, Copeland, Alex, Chen, I-Min A, Ivanova, Natalia N, Kyrpides, Nikos C, Harmon-Smith, Miranda, Eloe-Fadrosh, Emiley A, Pietrasiak, Nicole, Stajich, Jason E, Hom, Erik F Y

“…We present eight metatranscriptomic datasets of light algal and cyanolichen biological soil crusts from the Mojave Desert in response to wetting. These data…”
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Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials by Högfors-Rönnholm, Eva, Lopez-Fernandez, Margarita, Christel, Stephan, Brambilla, Diego, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I-Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Harmon-Smith, Miranda, Eloe-Fadrosh, Emiley A., Lundin, Daniel, Engblom, Sten, Dopson, Mark

“…Natural sulfide rich deposits are common in coastal areas worldwide, including along the Baltic Sea coast. When artificial drainage exposes these deposits to…”
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Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot by Camargo, Antonio Pedro, de Souza, Rafael Soares Correa, de Britto Costa, Patrícia, Gerhardt, Isabel Rodrigues, Dante, Ricardo Augusto, Teodoro, Grazielle Sales, Abrahão, Anna, Lambers, Hans, Carazzolle, Marcelo Falsarella, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I.-Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Pennacchio, Christa, Eloe-Fadrosh, Emiley A., Arruda, Paulo, Oliveira, Rafael Silva

“…The rocky, seasonally-dry and nutrient-impoverished soils of the Brazilian campos rupestre s impose severe growth-limiting conditions on plants. Species of a…”
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Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil by Chuckran, Peter F., Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Ivanova, Natalia N., Kyrpides, Nikos C., del Rio, Tijana Glavina, Eloe-Fadrosh, Emiley A., Morrissey, Ember M., Schwartz, Egbert, Fofanov, Viacheslav, Hungate, Bruce, Dijkstra, Paul

“…The addition of glucose to soil has long been used to study the metabolic activity of microbes in soil; however, the response of the microbial ecophysiology…”
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Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome by Bell, Terrence H, Trexler, Ryan V, Peng, Xin, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T B K, Daum, Chris, Copeland, Alex, Ivanova, Natalia N, Kyrpides, Nikos C, Pennacchio, Christa, Eloe-Fadrosh, Emiley A, Bruns, Mary Ann

“…Soil surface consortia are easily observed and sampled, allowing examination of their interactions with soil microbiomes. Here, we present metatranscriptomic…”
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Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina) by Peralta, Ariane L., Bledsoe, Regina B., Muscarella, Mario E., Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I-Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Glavina del Rio, Tijana, Eloe-Fadrosh, Emiley A.

“…Hydrologic changes modify microbial community structure and ecosystem functions, especially in wetland systems. Here, we present 24 metagenomes from a coastal…”
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