Search Results - "Fogg, Jonathan M."

Structural diversity of supercoiled DNA by Irobalieva, Rossitza N., Fogg, Jonathan M., Catanese, Daniel J., Sutthibutpong, Thana, Chen, Muyuan, Barker, Anna K., Ludtke, Steven J., Harris, Sarah A., Schmid, Michael F., Chiu, Wah, Zechiedrich, Lynn

“…By regulating access to the genetic code, DNA supercoiling strongly affects DNA metabolism. Despite its importance, however, much about supercoiled DNA…”
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Supercoiling and looping promote DNA base accessibility and coordination among distant sites by Fogg, Jonathan M., Judge, Allison K., Stricker, Erik, Chan, Hilda L., Zechiedrich, Lynn

“…DNA in cells is supercoiled and constrained into loops and this supercoiling and looping influence every aspect of DNA activity. We show here that negative…”
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Structural basis of DNA crossover capture by Escherichia coli DNA gyrase by Vayssières, Marlène, Marechal, Nils, Yun, Long, Lopez Duran, Brian, Murugasamy, Naveen Kumar, Fogg, Jonathan M, Zechiedrich, Lynn, Nadal, Marc, Lamour, Valérie

“…DNA supercoiling must be precisely regulated by topoisomerases to prevent DNA entanglement. The interaction of type IIA DNA topoisomerases with two DNA…”
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DNA supercoiling-induced shapes alter minicircle hydrodynamic properties by Waszkiewicz, Radost, Ranasinghe, Maduni, Fogg, Jonathan M, Catanese, Daniel J, Ekiel-Jeżewska, Maria L, Lisicki, Maciej, Demeler, Borries, Zechiedrich, Lynn, Szymczak, Piotr

“…Abstract DNA in cells is organized in negatively supercoiled loops. The resulting torsional and bending strain allows DNA to adopt a surprisingly wide variety…”
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Suitability of double-stranded DNA as a molecular standard for the validation of analytical ultracentrifugation instruments by Ranasinghe, Maduni, Fogg, Jonathan M., Catanese, Daniel J., Zechiedrich, Lynn, Demeler, Borries

“…To address the current lack of validated molecular standards for analytical ultracentrifugation (AUC), we investigated the suitability of double-stranded DNA…”
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Influence of DNA sequence on the structure of minicircles under torsional stress by Wang, Qian, Irobalieva, Rossitza N, Chiu, Wah, Schmid, Michael F, Fogg, Jonathan M, Zechiedrich, Lynn, Pettitt, B Montgomery

“…The sequence dependence of the conformational distribution of DNA under various levels of torsional stress is an important unsolved problem. Combining theory…”
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TopA, the Sulfolobus solfataricus topoisomerase III, is a decatenase by Bizard, Anna H, Yang, Xi, Débat, Hélène, Fogg, Jonathan M, Zechiedrich, Lynn, Strick, Terence R, Garnier, Florence, Nadal, Marc

“…Abstract DNA topoisomerases are essential enzymes involved in all the DNA processes and among them, type IA topoisomerases emerged as a key actor in the…”
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Ensuring Productive Resolution by the Junction-Resolving Enzyme RuvC: Large Enhancement of the Second-Strand Cleavage Rate by Fogg, Jonathan M, Lilley, David M. J

“…RuvC is the principal junction-resolving enzyme of Escherichia coli, cleaving four-way DNA junctions created in homologous recombination. It binds with…”
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Bullied no more: when and how DNA shoves proteins around by Fogg, Jonathan M, Randall, Graham L, Pettitt, B Montgomery, Sumners, De Witt L, Harris, Sarah A, Zechiedrich, Lynn

“…The predominant protein-centric perspective in protein-DNA-binding studies assumes that the protein drives the interaction. Research focuses on protein…”
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Erratum: Structural diversity of supercoiled DNA by Irobalieva, Rossitza N., Fogg, Jonathan M., Catanese, Daniel J., Sutthibutpong, Thana, Chen, Muyuan, Barker, Anna K., Ludtke, Steven J., Harris, Sarah A., Schmid, Michael F., Chiu, Wah, Zechiedrich, Lynn

“…Nature Communications, 6: Article number: 8440 (2015); Published: 12 October 2015; Updated: 29 October 2015 The original version of this Article contained an…”
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Holliday Junction Resolution Is Modulated by Archaeal Chromatin Components in Vitro by Kvaratskhelia, Mamuka, Wardleworth, Benjamin N., Bond, Charles S., Fogg, Jonathan M., Lilley, David M.J., White, Malcolm F.

“…The Holliday junction-resolving enzyme Hjc is conserved in the archaea and probably plays a role analogous to that ofEscherichia coli RuvC in the pathway of…”
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The complex between a four-way DNA junction and T7 endonuclease I by Déclais, Anne-Cécile, Fogg, Jonathan M., Freeman, Alasdair D. J., Coste, Franck, Hadden, Jonathan M., Phillips, Simon E. V., Lilley, David M. J.

“…The junction‐resolving enzyme endonuclease I is selective for the structure of the DNA four‐way (Holliday) junction. The enzyme binds to a four‐way junction in…”
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Distortion of DNA junctions imposed by the binding of resolving enzymes: a fluorescence study by Fogg, Jonathan M, Kvaratskhelia, Mamuka, White, Malcolm F, Lilley, David M.J

“…Junction-resolving enzymes are nucleases that are specific for the structure of the four-way DNA junction. The binding of RuvC of Escherichia coli and Hjc of…”
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Simultaneous DNA Binding and Bending by EcoRV Endonuclease Observed by Real-Time Fluorescence by Hiller, David A, Fogg, Jonathan M, Martin, Amy M, Beechem, Joseph M, Reich, Norbert O, Perona, John J

“…The complete catalytic cycle of EcoRV endonuclease has been observed by combining fluorescence anisotropy with fluorescence resonance energy transfer (FRET)…”
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Yeast Resolving Enzyme CCE1 Makes Sequential Cleavages in DNA Junctions within the Lifetime of the Complex by Fogg, Jonathan M, Schofield, Mark J, Déclais, Anne-Cécile, Lilley, David M. J

“…CCE1 is a DNA junction-resolving enzyme of Saccharomyces cerevisiae. Such enzymes are required to make two symmetrically paired cleavages in order to resolve…”
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Supercoiling and Looping Promote DNA Base Accessibility and Coordination among Distant Sites by Fogg, Jonathan M., Judge, Allison, Stricker, Erik, Chan, Hilda L., Zechiedrich, E. Lynn

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Sequence and Functional-Group Specificity for Cleavage of DNA Junctions by RuvC of Escherichia coli by Fogg, Jonathan M, Schofield, Mark J, White, Malcolm F, Lilley, David M. J

“…RuvC is the DNA junction-resolving enzyme of Escherichia coli. While the enzyme binds to DNA junctions independently of base sequence, it exhibits considerable…”
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DNA Shape Shifting as a Gene Therapy Tool by Fogg, Jonathan M., Wang, Qian, Judge, Allison, Stricker, Erik, Pettitt, B. Montgomery, Zechiedrich, Lynn

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