Search Results - "Fogarty, Emily C"

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome by Chitale, Poonam, Lemenze, Alexander D., Fogarty, Emily C., Shah, Avi, Grady, Courtney, Odom-Mabey, Aubrey R., Johnson, W. Evan, Yang, Jason H., Eren, A. Murat, Brosch, Roland, Kumar, Pradeep, Alland, David

“…H37Rv is the most widely used Mycobacterium tuberculosis strain, and its genome is globally used as the M. tuberculosis reference sequence. Here, we present…”
Get full text

Author Correction: A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome by Chitale, Poonam, Lemenze, Alexander D., Fogarty, Emily C., Shah, Avi, Grady, Courtney, Odom-Mabey, Aubrey R., Johnson, W. Evan, Yang, Jason H., Eren, A. Murat, Brosch, Roland, Kumar, Pradeep, Alland, David

Get full text

Functional Insights into the Kelp Microbiome from Metagenome-Assembled Genomes by Weigel, Brooke L, Miranda, Khashiff K, Fogarty, Emily C, Watson, Andrea R, Pfister, Catherine A

“…Eukaryotic organisms evolved in a microbial world and often have intimate associations with diverse bacterial groups. Kelp, brown macroalgae in the order ,…”
Get full text

The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes by Miranda, Khashiff, Weigel, Brooke L, Fogarty, Emily C, Veseli, Iva A, Giblin, Anne E, Eren, A Murat, Pfister, Catherine A

“…Coastal marine macrophytes exhibit some of the highest rates of primary productivity in the world. They have been found to host a diverse set of microbes, many…”
Get full text

Low diversity and microdiversity of comammox bacteria in wastewater systems suggest specific adaptations within the Ca. Nitrospira nitrosa cluster by Cotto, Irmarie, Vilardi, Katherine J., Huo, Linxuan, Fogarty, Emily C., Khunjar, Wendell, Wilson, Christopher, De Clippeleir, Haydee, Gilmore, Kevin, Bailey, Erika, Lücker, Sebastian, Pinto, Ameet J.

“…•AOB presented high diversity while Nitrospira-NOB presented high microdiversity.•A single species is the dominant comammox bacteria in multiple systems.•Each…”
Get full text

Community-led, integrated, reproducible multi-omics with anvi’o by Eren, A. Murat, Kiefl, Evan, Shaiber, Alon, Veseli, Iva, Miller, Samuel E., Schechter, Matthew S., Fink, Isaac, Pan, Jessica N., Yousef, Mahmoud, Fogarty, Emily C., Trigodet, Florian, Watson, Andrea R., Esen, Özcan C., Moore, Ryan M., Clayssen, Quentin, Lee, Michael D., Kivenson, Veronika, Graham, Elaina D., Merrill, Bryan D., Karkman, Antti, Blankenberg, Daniel, Eppley, John M., Sjödin, Andreas, Scott, Jarrod J., Vázquez-Campos, Xabier, McKay, Luke J., McDaniel, Elizabeth A., Stevens, Sarah L. R., Anderson, Rika E., Fuessel, Jessika, Fernandez-Guerra, Antonio, Maignien, Lois, Delmont, Tom O., Willis, Amy D.

“…Big data abound in microbiology, but the workflows designed to enable researchers to interpret data can constrain the biological questions that can be asked…”
Get full text

A cryptic plasmid is among the most numerous genetic elements in the human gut by Fogarty, Emily C, Schechter, Matthew S, Lolans, Karen, Sheahan, Madeline L, Veseli, Iva, Moore, Ryan M, Kiefl, Evan, Moody, Thomas, Rice, Phoebe A, Yu, Michael K, Mimee, Mark, Chang, Eugene B, Ruscheweyh, Hans-Joachim, Sunagawa, Shinichi, Mclellan, Sandra L, Willis, Amy D, Comstock, Laurie E, Eren, A Murat

“…Plasmids are extrachromosomal genetic elements that often encode fitness-enhancing features. However, many bacteria carry "cryptic" plasmids that do not confer…”
Get more information

Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess by Yu, Michael K., Fogarty, Emily C., Eren, A. Murat

“…Plasmids alter microbial evolution and lifestyles by mobilizing genes that often confer fitness in changing environments across clades. Yet our ecological and…”
Get full text

Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn’s Disease by Runde, Joseph, Veseli, Iva, Fogarty, Emily C, Watson, Andrea R, Clayssen, Quentin, Yosef, Mahmoud, Shaiber, Alon, Verma, Ritu, Quince, Christopher, Gerasimidis, Konstantinos, Rubin, David T, Eren, A Murat

“…Abstract Background and Aims Exclusive enteral nutrition [EEN] is a dietary intervention to induce clinical remission in children with active luminal Crohn’s…”
Get full text