Search Results - "Fischl, Bruce"

FastSurfer - A fast and accurate deep learning based neuroimaging pipeline by Henschel, Leonie, Conjeti, Sailesh, Estrada, Santiago, Diers, Kersten, Fischl, Bruce, Reuter, Martin

“…Traditional neuroimage analysis pipelines involve computationally intensive, time-consuming optimization steps, and thus, do not scale well to large cohort…”
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Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature by Destrieux, Christophe, Fischl, Bruce, Dale, Anders, Halgren, Eric

“…Precise localization of sulco-gyral structures of the human cerebral cortex is important for the interpretation of morpho-functional data, but requires…”
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Accurate and robust brain image alignment using boundary-based registration by Greve, Douglas N., Fischl, Bruce

“…The fine spatial scales of the structures in the human brain represent an enormous challenge to the successful integration of information from different images…”
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Highly accurate inverse consistent registration: A robust approach by Reuter, Martin, Rosas, H. Diana, Fischl, Bruce

“…The registration of images is a task that is at the core of many applications in computer vision. In computational neuroimaging where the automated…”
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Within-subject template estimation for unbiased longitudinal image analysis by Reuter, Martin, Schmansky, Nicholas J., Rosas, H. Diana, Fischl, Bruce

“…Longitudinal image analysis has become increasingly important in clinical studies of normal aging and neurodegenerative disorders. Furthermore, there is a…”
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SynthStrip: skull-stripping for any brain image by Hoopes, Andrew, Mora, Jocelyn S., Dalca, Adrian V., Fischl, Bruce, Hoffmann, Malte

“…•SynthStrip is a universal, learning-based skull-stripping utility.•Cutting-edge performance across imaging modality, resolution, and subject population.•Use…”
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BrainPrint: a discriminative characterization of brain morphology by Wachinger, Christian, Golland, Polina, Kremen, William, Fischl, Bruce, Reuter, Martin

“…We introduce BrainPrint, a compact and discriminative representation of brain morphology. BrainPrint captures shape information of an ensemble of cortical and…”
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Gray matter myelination of 1555 human brains using partial volume corrected MRI images by Shafee, Rebecca, Buckner, Randy L., Fischl, Bruce

“…The myelin content of the cortex changes over the human lifetime and aberrant cortical myelination is associated with diseases such as schizophrenia and…”
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A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology by Iglesias, Juan Eugenio, Insausti, Ricardo, Lerma-Usabiaga, Garikoitz, Bocchetta, Martina, Van Leemput, Koen, Greve, Douglas N., van der Kouwe, Andre, Fischl, Bruce, Caballero-Gaudes, César, Paz-Alonso, Pedro M.

“…The human thalamus is a brain structure that comprises numerous, highly specific nuclei. Since these nuclei are known to have different functions and to be…”
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Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0–2 years by Zöllei, Lilla, Iglesias, Juan Eugenio, Ou, Yangming, Grant, P. Ellen, Fischl, Bruce

“…The development of automated tools for brain morphometric analysis in infants has lagged significantly behind analogous tools for adults. This gap reflects the…”
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A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI by Iglesias, Juan Eugenio, Augustinack, Jean C., Nguyen, Khoa, Player, Christopher M., Player, Allison, Wright, Michelle, Roy, Nicole, Frosch, Matthew P., McKee, Ann C., Wald, Lawrence L., Fischl, Bruce, Van Leemput, Koen

“…Automated analysis of MRI data of the subregions of the hippocampus requires computational atlases built at a higher resolution than those that are typically…”
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Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners by Brown, Emma M., Pierce, Meghan E., Clark, Dustin C., Fischl, Bruce R., Iglesias, Juan E., Milberg, William P., McGlinchey, Regina E., Salat, David H.

“…The human hippocampus is vulnerable to a range of degenerative conditions and as such, accurate in vivo measurement of the hippocampus and hippocampal…”
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The minimal preprocessing pipelines for the Human Connectome Project by Glasser, Matthew F., Sotiropoulos, Stamatios N., Wilson, J. Anthony, Coalson, Timothy S., Fischl, Bruce, Andersson, Jesper L., Xu, Junqian, Jbabdi, Saad, Webster, Matthew, Polimeni, Jonathan R., Van Essen, David C., Jenkinson, Mark

“…The Human Connectome Project (HCP) faces the challenging task of bringing multiple magnetic resonance imaging (MRI) modalities together in a common automated…”
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Cortical surface registration using unsupervised learning by Cheng, Jieyu, Dalca, Adrian V., Fischl, Bruce, Zöllei, Lilla

“…Non-rigid cortical registration is an important and challenging task due to the geometric complexity of the human cortex and the high degree of inter-subject…”
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Head motion during MRI acquisition reduces gray matter volume and thickness estimates by Reuter, Martin, Tisdall, M Dylan, Qureshi, Abid, Buckner, Randy L, van der Kouwe, André J W, Fischl, Bruce

“…Imaging biomarkers derived from magnetic resonance imaging (MRI) data are used to quantify normal development, disease, and the effects of disease-modifying…”
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Geometrically Accurate Topology-Correction of Cortical Surfaces Using Nonseparating Loops by Segonne, F., Pacheco, J., Fischl, B.

“…In this paper, we focus on the retrospective topology correction of surfaces. We propose a technique to accurately correct the spherical topology of cortical…”
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The organization of the human cerebral cortex estimated by intrinsic functional connectivity by Yeo, B T Thomas, Krienen, Fenna M, Sepulcre, Jorge, Sabuncu, Mert R, Lashkari, Danial, Hollinshead, Marisa, Roffman, Joshua L, Smoller, Jordan W, Zöllei, Lilla, Polimeni, Jonathan R, Fischl, Bruce, Liu, Hesheng, Buckner, Randy L

“…Information processing in the cerebral cortex involves interactions among distributed areas. Anatomical connectivity suggests that certain areas form local…”
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Laminar analysis of 7T BOLD using an imposed spatial activation pattern in human V1 by Polimeni, Jonathan R., Fischl, Bruce, Greve, Douglas N., Wald, Lawrence L.

“…With sufficient image encoding, high-resolution fMRI studies are limited by the biological point-spread of the hemodynamic signal. The extent of this spread is…”
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Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast by Iglesias, Juan Eugenio, Billot, Benjamin, Balbastre, Yaël, Tabari, Azadeh, Conklin, John, Gilberto González, R., Alexander, Daniel C., Golland, Polina, Edlow, Brian L., Fischl, Bruce

“…•SynthSR turns clinical scans of different resolution and contrast into 1 mm MPRAGEs.•It relies on a CNN trained on fake images synthesized on the fly at every…”
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Volumetric navigators for prospective motion correction and selective reacquisition in neuroanatomical MRI by Tisdall, M. Dylan, Hess, Aaron T., Reuter, Martin, Meintjes, Ernesta M., Fischl, Bruce, van der Kouwe, André J. W.

“…We introduce a novel method of prospectively compensating for subject motion in neuroanatomical imaging. Short three‐dimensional echo‐planar imaging volumetric…”
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