Search Results - "Ferrari, Allan J R"

Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints by Ferrari, Allan J R, Gozzo, Fabio C, Martínez, Leandro

“…Chemical cross-linking/mass spectrometry (XLMS) is an experimental method to obtain distance constraints between amino acid residues which can be applied to…”
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TopoLink: evaluation of structural models using chemical crosslinking distance constraints by Ferrari, Allan J R, Clasen, Milan A, Kurt, Louise, Carvalho, Paulo C, Gozzo, Fabio C, Martínez, Leandro

“…A software was developed to evaluate structural models using chemical crosslinking experiments. The user provides the types of linkers used and their…”
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Crystal structure of the human Tip41 orthologue, TIPRL, reveals a novel fold and a binding site for the PP2Ac C-terminus by Scorsato, Valéria, Lima, Tatiani B., Righetto, Germanna L., Zanchin, Nilson I. T., Brandão-Neto, José, Sandy, James, Pereira, Humberto D’Muniz, Ferrari, Állan J. R., Gozzo, Fabio C., Smetana, Juliana H. C., Aparicio, Ricardo

“…TOR signaling pathway regulator-like (TIPRL) is a regulatory protein which inhibits the catalytic subunits of Type 2A phosphatases. Several cellular contexts…”
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Structural discrimination analysis for constraint selection in protein modeling by Bottino, Guilherme F, Ferrari, Allan J R, Gozzo, Fabio C, Martínez, Leandro

“…Abstract Motivation Protein structure modeling can be improved by the use of distance constraints between amino acid residues, provided such data reflects—at…”
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Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals by dos Santos, Ricardo N, Ferrari, Allan J R, de Jesus, Hugo C R, Gozzo, Fábio C, Morcos, Faruck, Martínez, Leandro

“…Abstract Motivation Elucidation of protein native states from amino acid sequences is a primary computational challenge. Modern computational and experimental…”
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Unveiling the interaction between the molecular motor Myosin Vc and the small GTPase Rab3A by Dolce, Luciano G., Ohbayashi, Norihiko, Silva, Daniel F.C. da, Ferrari, Allan J.R., Pirolla, Renan A.S., Schwarzer, Ana C. de A.P., Zanphorlin, Leticia M., Cabral, Lucelia, Fioramonte, Mariana, Ramos, Carlos H.I., Gozzo, Fabio Cesar, Fukuda, Mitsunori, Giuseppe, Priscila O. de, Murakami, Mário T.

“…Vertebrates usually have three class V myosin paralogues (MyoV) to control membrane trafficking in the actin-rich cell cortex, but their functional overlapping…”
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Diurnal metabolism of energy-cane and sugarcane: A metabolomic and non-structural carbohydrate analysis by Da Silva, Jovanderson J.B., De Abreu, Luís G.F., Ferrari, Allan J.R., De Carvalho, Lucas M., Grandis, Adriana, Buckeridge, Marcos S., Fill, Taícia P., Pereira, Gonçalo A.G., Carazzolle, Marcelo F.

“…Energy-cane is a cross breed between commercial sugarcane and S. spontaneum, a hybrid that has higher fiber content, low sucrose and greater productivity…”
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SARS-CoV-2 uses CD4 to infect T helper lymphocytes by Brunetti, Natalia S, Davanzo, Gustavo G, de Moraes, Diogo, Ferrari, Allan J R, Souza, Gabriela F, Muraro, Stéfanie Primon, Knittel, Thiago L, Boldrini, Vinicius O, Monteiro, Lauar B, Virgílio-da-Silva, João Victor, Profeta, Gerson S, Wassano, Natália S, Nunes Santos, Luana, Carregari, Victor C, Dias, Artur H S, Veras, Flavio P, Tavares, Lucas A, Forato, Julia, Castro, Icaro M S, Silva-Costa, Lícia C, Palma, André C, Mansour, Eli, Ulaf, Raisa G, Bernardes, Ana F, Nunes, Thyago A, Ribeiro, Luciana C, Agrela, Marcus V, Moretti, Maria Luiza, Buscaratti, Lucas I, Crunfli, Fernanda, Ludwig, Raissa G, Gerhardt, Jaqueline A, Munhoz-Alves, Natália, Marques, Ana Maria, Sesti-Costa, Renata, Amorim, Mariene R, Toledo-Teixeira, Daniel A, Parise, Pierina Lorencini, Martini, Matheus Cavalheiro, Bispos-Dos-Santos, Karina, Simeoni, Camila L, Granja, Fabiana, Silvestrini, Virgínia C, de Oliveira, Eduardo B, Faca, Vitor M, Carvalho, Murilo, Castelucci, Bianca G, Pereira, Alexandre B, Coimbra, Laís D, Dias, Marieli M G, Rodrigues, Patricia B, Gomes, Arilson Bernardo S P, Pereira, Fabricio B, Santos, Leonilda M B, Bloyet, Louis-Marie, Stumpf, Spencer, Pontelli, Marjorie C, Whelan, Sean, Sposito, Andrei C, Carvalho, Robson F, Vieira, André S, Vinolo, Marco A R, Damasio, André, Velloso, Licio, Figueira, Ana Carolina M, da Silva, Luis L P, Cunha, Thiago Mattar, Nakaya, Helder I, Marques-Souza, Henrique, Marques, Rafael E, Martins-de-Souza, Daniel, Skaf, Munir S, Proenca-Modena, Jose Luiz, Moraes-Vieira, Pedro M M, Mori, Marcelo A, Farias, Alessandro S

“…The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the agent of a major global outbreak of respiratory tract disease known as Coronavirus…”
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