Search Results - "Federici, Fernan"

Low cost and open source multi-fluorescence imaging system for teaching and research in biology and bioengineering by Nuñez, Isaac, Matute, Tamara, Herrera, Roberto, Keymer, Juan, Marzullo, Timothy, Rudge, Timothy, Federici, Fernán

“…The advent of easy-to-use open source microcontrollers, off-the-shelf electronics and customizable manufacturing technologies has facilitated the development…”
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A molecular framework for the inhibition of Arabidopsis root growth in response to boron toxicity by AQUEA, FELIPE, FEDERICI, FERNAN, MOSCOSO, CRISTIAN, VEGA, ANDREA, JULLIAN, PASTOR, HASELOFF, JIM, ARCE-JOHNSON, PATRICIO

“…ABSTRACT Boron is an essential micronutrient for plants and is taken up in the form of boric acid (BA). Despite this, a high BA concentration is toxic for the…”
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Orthogonal intercellular signaling for programmed spatial behavior by Grant, Paul K, Dalchau, Neil, Brown, James R, Federici, Fernan, Rudge, Timothy J, Yordanov, Boyan, Patange, Om, Phillips, Andrew, Haseloff, Jim

“…Bidirectional intercellular signaling is an essential feature of multicellular organisms, and the engineering of complex biological systems will require…”
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Spatial biology of Ising-like synthetic genetic networks by Simpson, Kevin, L'Homme, Alfredo, Keymer, Juan, Federici, Fernán

“…Abstract Background Understanding how spatial patterns of gene expression emerge from the interaction of individual gene networks is a fundamental challenge in…”
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Loop assembly: a simple and open system for recursive fabrication of DNA circuits by Pollak, Bernardo, Cerda, Ariel, Delmans, Mihails, Álamos, Simón, Moyano, Tomás, West, Anthony, Gutiérrez, Rodrigo A., Patron, Nicola J., Federici, Fernán, Haseloff, Jim

“…• High-efficiency methods for DNA assembly have enabled the routine assembly of synthetic DNAs of increased size and complexity. However, these techniques…”
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High‐resolution live imaging of plant growth in near physiological bright conditions using light sheet fluorescence microscopy by Maizel, Alexis, von Wangenheim, Daniel, Federici, Fernán, Haseloff, Jim, Stelzer, Ernst H.K.

“…Summary Most plant growth occurs post‐embryonically and is characterized by the constant and iterative formation of new organs. Non‐invasive time‐resolved…”
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Gibberellin Signaling in the Endodermis Controls Arabidopsis Root Meristem Size by Ubeda-Tomás, Susana, Federici, Fernán, Casimiro, Ilda, Beemster, Gerrit T.S., Bhalerao, Rishikesh, Swarup, Ranjan, Doerner, Peter, Haseloff, Jim, Bennett, Malcolm J.

“…Plant growth is driven by cell proliferation and elongation [1]. The hormone gibberellin (GA) regulates Arabidopsis root growth [2–5] by controlling cell…”
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Integrated genetic and computation methods for in planta cytometry by Federici, Fernán, Dupuy, Lionel, Laplaze, Laurent, Heisler, Marcus, Haseloff, Jim

“…Automated cell segmentation in time-lapse confocal images of growing Arabidopsis combined with ratiometric imaging of fluorescent gene expression reporters…”
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Intercellular adhesion promotes clonal mixing in growing bacterial populations by Kan, Anton, Del Valle, Ilenne, Rudge, Tim, Federici, Fernán, Haseloff, Jim

“…Dense bacterial communities, known as biofilms, can have functional spatial organization driven by self-organizing chemical and physical interactions between…”
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Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model by Ron, Mily, Kajala, Kaisa, Pauluzzi, Germain, Wang, Dongxue, Reynoso, Mauricio A, Zumstein, Kristina, Garcha, Jasmine, Winte, Sonja, Masson, Helen, Inagaki, Soichi, Federici, Fernán, Sinha, Neelima, Deal, Roger B, Bailey-Serres, Julia, Brady, Siobhan M

“…Agrobacterium rhizogenes (or Rhizobium rhizogenes) is able to transform plant genomes and induce the production of hairy roots. We describe the use of A…”
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An Open One-Step RT-qPCR for SARS-CoV-2 detection by Cerda, Ariel, Rivera, Maira, Armijo, Grace, Ibarra-Henriquez, Catalina, Reyes, Javiera, Blázquez-Sánchez, Paula, Avilés, Javiera, Arce, Aníbal, Seguel, Aldo, Brown, Alexander J, Vásquez, Yesseny, Cortez-San Martín, Marcelo, Cubillos, Francisco A, García, Patricia, Ferres, Marcela, Ramírez-Sarmiento, César A, Federici, Fernán, Gutiérrez, Rodrigo A

“…The COVID-19 pandemic has resulted in millions of deaths globally, and while several diagnostic systems were proposed, real-time reverse transcription…”
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Accessible LAMP-Enabled Rapid Test (ALERT) for Detecting SARS-CoV-2 by Bektaş, Ali, Covington, Michael F, Aidelberg, Guy, Arce, Anibal, Matute, Tamara, Núñez, Isaac, Walsh, Julia, Boutboul, David, Delaugerre, Constance, Lindner, Ariel B, Federici, Fernán, Jayaprakash, Anitha D

“…The coronavirus disease 2019 (COVID-19) pandemic has highlighted bottlenecks in large-scale, frequent testing of populations for infections. Polymerase chain…”
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Decentralizing Cell-Free RNA Sensing With the Use of Low-Cost Cell Extracts by Arce, Anibal, Guzman Chavez, Fernando, Gandini, Chiara, Puig, Juan, Matute, Tamara, Haseloff, Jim, Dalchau, Neil, Molloy, Jenny, Pardee, Keith, Federici, Fernán

“…Cell-free gene expression systems have emerged as a promising platform for field-deployed biosensing and diagnostics. When combined with programmable toehold…”
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An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 To Stimulate Plant Growth by Zúñiga, Ana, Fuente, Francisco de la, Federici, Fernán, Lionne, Corinne, Bônnet, Jérome, de Lorenzo, Victor, González, Bernardo

“…The environmental effects of chemical fertilizers and pesticides have encouraged the quest for new strategies to increase crop productivity with minimal…”
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Universal loop assembly: open, efficient and cross-kingdom DNA fabrication by Pollak, Bernardo, Matute, Tamara, Nuñez, Isaac, Cerda, Ariel, Lopez, Constanza, Vargas, Valentina, Kan, Anton, Bielinski, Vincent, von Dassow, Peter, Dupont, Chris L, Federici, Fernán

“…Standardized type IIS DNA assembly methods are becoming essential for biological engineering and research. These methods are becoming widespread and more…”
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Isolation of the three grape sub-lineages of B-class MADS-box TM6, PISTILLATA and APETALA3 genes which are differentially expressed during flower and fruit development by Poupin, María Josefina, Federici, Fernán, Medina, Consuelo, Matus, José Tomás, Timmermann, Tania, Arce-Johnson, Patricio

“…The B class of MADS-box floral homeotic genes specifies petal and stamen identity in angiosperms. While this group is one of the most studied in herbaceous…”
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Flapjack: Data Management and Analysis for Genetic Circuit Characterization by Yáñez Feliú, Guillermo, Earle Gómez, Benjamín, Codoceo Berrocal, Verner, Muñoz Silva, Macarena, Nuñez, Isaac N., Matute, Tamara F., Arce Medina, Anibal, Vidal, Gonzalo, Vitalis, Carolus, Dahlin, Jonathan, Federici, Fernán, Rudge, Timothy J.

“…Characterization is fundamental to the design, build, test, learn (DBTL) cycle for engineering synthetic genetic circuits. Components must be described in such…”
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Accurate characterization of dynamic microbial gene expression and growth rate profiles by Vidal, Gonzalo, Vidal-Céspedes, Carlos, Muñoz Silva, Macarena, Castillo-Passi, Carlos, Yáñez Feliú, Guillermo, Federici, Fernán, Rudge, Timothy J

“…Abstract Genetic circuits are subject to variability due to cellular and compositional contexts. Cells face changing internal states and environments, the…”
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Genetic tool development in marine protists: emerging model organisms for experimental cell biology by Faktorová, Drahomíra, Nisbet, R. Ellen R., Fernández Robledo, José A., Casacuberta, Elena, Sudek, Lisa, Allen, Andrew E., Ares, Manuel, Aresté, Cristina, Barbrook, Adrian C., Beardslee, Patrick, Bender, Sara, Booth, David S., Bouget, François-Yves, Bowler, Chris, Breglia, Susana A., Brownlee, Colin, Burger, Gertraud, Cerutti, Heriberto, Cesaroni, Rachele, Chiurillo, Miguel A., Clemente, Thomas, Coles, Duncan B., Collier, Jackie L., Cooney, Elizabeth C., Docampo, Roberto, Dupont, Christopher L., Edgcomb, Virginia, Einarsson, Elin, Elustondo, Pía A., Freire-Beneitez, Veronica, Freyria, Nastasia J., Fukuda, Kodai, Girguis, Peter R., Gomaa, Fatma, Gornik, Sebastian G., Guo, Jian, Hanawa, Yutaka, Hehenberger, Elisabeth, Highfield, Andrea, Hirakawa, Yoshihisa, Hopes, Amanda, Howe, Christopher J., Hu, Ian, Ibañez, Jorge, Irwin, Nicholas A. T., Janowicz, Natalia Ewa, Jones, Adam C., Kachale, Ambar, Fujimura-Kamada, Konomi, Kaur, Binnypreet, Kazana, Eleanna, Keeling, Patrick J., King, Nicole, Klobutcher, Lawrence A., Lander, Noelia, Lassadi, Imen, Lin, Senjie, Lozano, Jean-Claude, Luan, Fulei, Maruyama, Shinichiro, Matute, Tamara, Miceli, Cristina, Minagawa, Jun, Najle, Sebastián R., Nanjappa, Deepak, Nimmo, Isabel C., Noble, Luke, Novák Vanclová, Anna M. G., Nowacki, Mariusz, Nuñez, Isaac, Pain, Arnab, Pucciarelli, Sandra, Pyrih, Jan, Rest, Joshua S., Rius, Mariana, Robertson, Deborah, Ruaud, Albane, Ruiz-Trillo, Iñaki, Sigg, Monika A., Silver, Pamela A., Jason Smith, G., Sprecher, Brittany N., Stern, Rowena, Swart, Estienne C., Tsaousis, Anastasios D., Tsypin, Lev, Turkewitz, Aaron, Valach, Matus, Vergé, Valérie, von Dassow, Peter, von der Haar, Tobias, Waller, Ross F., Wang, Lu, Wen, Xiaoxue, Wheeler, Glen, Woods, April, Zhang, Huan, Mock, Thomas, Worden, Alexandra Z., Lukeš, Julius

“…Diverse microbial ecosystems underpin life in the sea. Among these microbes are many unicellular eukaryotes that span the diversity of the eukaryotic tree of…”
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Cell Polarity-Driven Instability Generates Self-Organized, Fractal Patterning of Cell Layers by Rudge, Timothy J, Federici, Fernán, Steiner, Paul J, Kan, Anton, Haseloff, Jim

“…As a model system to study physical interactions in multicellular systems, we used layers of Escherichia coli cells, which exhibit little or no intrinsic…”
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