Search Results - "Farago, Oded"

A simple statistical-mechanical interpretation of Onsager reciprocal relations and Derjaguin theory of thermo-osmosis by Farago, Oded

“… The application of a temperature gradient along a fluid-solid interface generates stresses in the fluid causing “thermo-osmotic” flow. Much of the…”
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Characterizing the heterogeneity of membrane liquid-ordered domains by Sarkar, Tanmoy, Farago, Oded

“…We use a lattice model of a ternary mixture containing saturated and unsaturated lipids with cholesterol (Chol), to study the structural properties…”
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Reactive Momentum Transfer Contributes to the Self-Propulsion of Janus Particles by Eloul, Shaltiel, Poon, Wilson C K, Farago, Oded, Frenkel, Daan

“…We report simulations of a spherical Janus particle undergoing exothermic surface reactions around one pole only. Our model excludes self-phoretic transport by…”
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Constant pressure and temperature discrete-time Langevin molecular dynamics by Grønbech-Jensen, Niels, Farago, Oded

“…We present a new and improved method for simultaneous control of temperature and pressure in molecular dynamics simulations with periodic boundary conditions…”
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Small membranes under negative surface tension by Avital, Yotam Y, Farago, Oded

“…We use computer simulations and a simple free energy model to study the response of a bilayer membrane to the application of a negative (compressive)…”
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Minimal lattice model of lipid membranes with liquid-ordered domains by Sarkar, Tanmoy, Farago, Oded

“…Mixtures of lipids and cholesterol are commonly used as model systems for studying the formation of liquid-ordered (L_{o}) domains in heterogeneous biological…”
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Algorithms for Brownian dynamics across discontinuities by Farago, Oded

“…•The solution of a time-dependent diffusion equation is computed from an ensemble of Langevin dynamics trajectories.•The Langevin integrator is supplemented…”
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Langevin thermostat for robust configurational and kinetic sampling by Farago, Oded

“…We reformulate the algorithm of Grønbech-Jensen and Farago (GJF) for Langevin dynamics simulations at constant temperature. The GJF algorithm has become…”
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Mechanical surface tension governs membrane thermal fluctuations by Farago, Oded

“…We use analytical considerations and computer simulations to show that the membrane spectrum of thermal fluctuations is governed by the mechanical and not the…”
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Elasticity and mechanical instability of charged lipid bilayers in ionic solutions by Avital, Yotam Y., Grønbech-Jensen, Niels, Farago, Oded

“… We use coarse-grained Monte Carlo simulations to study the elastic properties of charged membranes in solutions of monovalent and pentavalent counterions…”
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Fluctuation-induced attraction between adhesion sites of supported membranes by Farago, Oded

“…We use scaling arguments and coarse-grained Monte Carlo simulations to study the fluctuation-mediated interactions between a pair of adhesion sites of a…”
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Langevin dynamics in inhomogeneous media: Re-examining the Itô-Stratonovich dilemma by Farago, Oded, Grønbech-Jensen, Niels

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Application of underdamped Langevin dynamics simulations for the study of diffusion from a drug-eluting stent by Regev, Shaked, Farago, Oded

“…We use a one-dimensional two layer model with a semi-permeable membrane to study the diffusion of a therapeutic drug delivered from a drug-eluting stent (DES)…”
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A Langevin dynamics approach for multi-layer mass transfer problems by Farago, Oded, Pontrelli, Giuseppe

“…We use Langevin dynamics simulations to study the mass diffusion problem across two adjacent porous layers of different transport properties. At the interface…”
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A simple and effective Verlet-type algorithm for simulating Langevin dynamics by Grønbech-Jensen, Niels, Farago, Oded

“…We present a revision to the well known Störmer-Verlet algorithm for simulating second order differential equations. The revision addresses the inclusion of…”
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Formation of adhesion domains in stressed and confined membranes by Dharan, Nadiv, Farago, Oded

“…The adhesion bonds connecting a lipid bilayer to an underlying surface may undergo a condensation transition resulting from an interplay between a short range…”
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Mode excitation Monte Carlo simulations of mesoscopically large membranes by Farago, Oded

“…Solvent-free coarse grained models represent one of the most promising approaches for molecular simulations of mesoscopically large membranes. In these models,…”
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Entropic attraction of adhesion bonds toward cell boundaries by Weil, Noam, Farago, Oded

“…Adhesion bonds between membranes and surfaces are attracted to each other via effective interactions whose origin is the entropy loss due to the reduction in…”
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Application of the G-JF discrete-time thermostat for fast and accurate molecular simulations by Grønbech-Jensen, Niels, Hayre, Natha Robert, Farago, Oded

“…A new Langevin–Verlet thermostat that preserves the fluctuation–dissipation relationship for discrete time steps is applied to molecular modeling and tested…”
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Interplay between membrane elasticity and active cytoskeleton forces regulates the aggregation dynamics of the immunological synapse by Dharan, Nadiv, Farago, Oded

“…Adhesion between a T cell and an antigen presenting cell is achieved by TCR-pMHC and LFA1-ICAM1 protein complexes. These segregate to form a special pattern,…”
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