Search Results - "Faraci, Gina"

Immune cell identifier and classifier (ImmunIC) for single cell transcriptomic readouts by Park, Sung Yong, Ter-Saakyan, Sonia, Faraci, Gina, Lee, Ha Youn

“…Single cell RNA sequencing has a central role in immune profiling, identifying specific immune cells as disease markers and suggesting therapeutic target genes…”
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High-precision and cost-efficient sequencing for real-time COVID-19 surveillance by Park, Sung Yong, Faraci, Gina, Ward, Pamela M., Emerson, Jane F., Lee, Ha Youn

“…COVID-19 global cases have climbed to more than 33 million, with over a million total deaths, as of September, 2020. Real-time massive SARS-CoV-2 whole genome…”
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Precision detection of recent HIV infections using high-throughput genomic incidence assay by Faraci, Gina, Park, Sung Yong, Love, Tanzy M. T., Dubé, Michael P., Lee, Ha Youn

“…ABSTRACT HIV incidence is a key measure for tracking disease spread and identifying populations and geographic regions where new infections are most…”
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Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale by Park, Sung Yong, Faraci, Gina, Ward, Pamela, Lee, Ha Youn

“…Despite optimistic predictions on the eventual end of COVID-19 (Coronavirus Disease 2019), caution is necessary regarding the emergence of new variants to…”
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Portable Nanopore sequencing solution for next-generation HIV drug resistance testing by Park, Sung Yong, Faraci, Gina, Ganesh, Kevin, Dubé, Michael P., Lee, Ha Youn

“…•We developed a HIV genotype testing pipeline that centers on a cost-efficient portable Nanopore sequencer.•A total of 472 HIV consensus sequences, each tagged…”
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Full-spectrum HIV drug resistance mutation detection by high-resolution complete pol gene sequencing by Faraci, Gina, Park, Sung Yong, Dubé, Michael P., Lee, Ha Youn

“…•We produced 358 full-length HIV pol gene sequences by combining microdroplet amplification, unique molecular identifier labeling, and long-read…”
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Microdrop Human Immunodeficiency Virus Sequencing for Incidence and Drug Resistance Surveillance by Park, Sung Yong, Faraci, Gina, Murphy, Gary, Pilcher, Christopher, Busch, Michael P, Lee, Ha Youn

“…Abstract Background Precise and cost-efficient human immunodeficiency virus (HIV) incidence and drug resistance surveillances are in high demand for the…”
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Symposium: What Does the Microbiome Tell Us about Prevention and Treatment of AD/ADRD? by Capocchi, Joia K, Figueroa-Romero, Claudia, Dunham, Sage J B, Faraci, Gina, Rothman, Jason A, Whiteson, Katrine L, Seo, Dong-Oh, Holtzman, David M, Grabrucker, Stefanie, Nolan, Yvonne M, Kaddurah-Daouk, Rima, Jett, David A

“…Alzheimer's disease (AD) and Alzheimer's disease-related dementias (ADRDs) are broad-impact multifactorial neurodegenerative diseases. Their complexity…”
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CCMP: Software-as-a-service approach for fully-automated microbiome profiling by Park, Sung Yong, Nanda, Sayan, Faraci, Gina, Park, Younghu, Lee, Ha Youn

“…[Display omitted] •CCMP is a free-of-charge software-as-a-service (SaaS) for microbiome analysis.•CCMP is fully accessible to users with limited bioinformatics…”
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Sex‐specific associations between AD genotype and the microbiome of human amyloid beta knock‐in (hAβ‐KI) mice by Dunham, Sage J. B., Avelar‐Barragan, Julio, Rothman, Jason A., Adams, Eric D., Faraci, Gina, Forner, Stefania, Kawauchi, Shimako, Tenner, Andrea J., Green, Kim N., LaFerla, Frank M., MacGregor, Grant R., Mapstone, Mark, Whiteson, Katrine L.

“…INTRODUCTION Emerging evidence links changes in the gut microbiome to late‐onset Alzheimer's disease (LOAD), necessitating examination of AD mouse models with…”
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Gut microbiome in people living with HIV is associated with impaired thiamine and folate syntheses by Park, Sung Yong, Faraci, Gina, Nanda, Sayan, Ter-Saakyan, Sonia, Love, Tanzy M.T., Mack, Wendy J., Dubé, Michael P., Lee, Ha Youn

“…People living with HIV have a high incidence of cardiovascular and neurological diseases as comorbid disorders that are commonly linked to inflammation. While…”
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