Search Results - "Fadnavis, Shreyas"

QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data by Cieslak, Matthew, Cook, Philip A., He, Xiaosong, Yeh, Fang-Cheng, Dhollander, Thijs, Adebimpe, Azeez, Aguirre, Geoffrey K., Bassett, Danielle S., Betzel, Richard F., Bourque, Josiane, Cabral, Laura M., Davatzikos, Christos, Detre, John A., Earl, Eric, Elliott, Mark A., Fadnavis, Shreyas, Fair, Damien A., Foran, Will, Fotiadis, Panagiotis, Garyfallidis, Eleftherios, Giesbrecht, Barry, Gur, Ruben C., Gur, Raquel E., Kelz, Max B., Keshavan, Anisha, Larsen, Bart S., Luna, Beatriz, Mackey, Allyson P., Milham, Michael P., Oathes, Desmond J., Perrone, Anders, Pines, Adam R., Roalf, David R., Richie-Halford, Adam, Rokem, Ariel, Sydnor, Valerie J., Tapera, Tinashe M., Tooley, Ursula A., Vettel, Jean M., Yeatman, Jason D., Grafton, Scott T., Satterthwaite, Theodore D.

“…Diffusion-weighted magnetic resonance imaging (dMRI) is the primary method for noninvasively studying the organization of white matter in the human brain. Here…”
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Multi-scale V-net architecture with deep feature CRF layers for brain extraction by Park, Jong Sung, Fadnavis, Shreyas, Garyfallidis, Eleftherios

“…Background Brain extraction is a computational necessity for researchers using brain imaging data. However, the complex structure of the interfaces between the…”
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Optimal partitioning methods for image segmentation by Fadnavis, Shreyas

“…The importance of image processing is increasing in the digitally connected world due to its numerous applications in various fields of medical science,…”
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Denoising of diffusion MRI in the cervical spinal cord – effects of denoising strategy and acquisition on intra-cord contrast, signal modeling, and feature conspicuity by Schilling, Kurt G., Fadnavis, Shreyas, Batson, Joshua, Visagie, Mereze, Combes, Anna J.E., By, Samantha, McKnight, Colin D., Bagnato, Francesca, Garyfallidis, Eleftherios, Landman, Bennett A., Smith, Seth A., O'Grady, Kristin P.

“…•We extend use of three denoising algorithms to cervical spinal cord DTI data.•Marchenko-Pastur PCA and Patch2Self improve image quality for visual and…”
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Bifurcated Topological Optimization for IVIM by Fadnavis, Shreyas, Endres, Stefan, Wen, Qiuting, Wu, Yu-Chien, Cheng, Hu, Koudoro, Serge, Rane, Swati, Rokem, Ariel, Garyfallidis, Eleftherios

“…In this work, we shed light on the issue of estimating Intravoxel Incoherent Motion (IVIM) for diffusion and perfusion estimation by characterizing the…”
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Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography by Hansen, Colin B, Yang, Qi, Lyu, Ilwoo, Rheault, Francois, Kerley, Cailey, Chandio, Bramsh Qamar, Fadnavis, Shreyas, Williams, Owen, Shafer, Andrea T., Resnick, Susan M., Zald, David H., Cutting, Laurie E, Taylor, Warren D, Boyd, Brian, Garyfallidis, Eleftherios, Anderson, Adam W, Descoteaux, Maxime, Landman, Bennett A, Schilling, Kurt G

“…Brain atlases have proven to be valuable neuroscience tools for localizing regions of interest and performing statistical inferences on populations. Although…”
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Fusion of biomedical imaging studies for increased sample size and diversity: a case study of brain MRI by Aiskovich, Matias, Castro, Eduardo, Reinen, Jenna M, Fadnavis, Shreyas, Mehta, Anushree, Li, Hongyang, Dhurandhar, Amit, Cecchi, Guillermo A, Polosecki, Pablo

“…Data collection, curation, and cleaning constitute a crucial phase in Machine Learning (ML) projects. In biomedical ML, it is often desirable to leverage…”
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Segmentation of the brain using direction-averaged signal of DWI images by Cheng, Hu, Newman, Sharlene, Afzali, Maryam, Fadnavis, Shreyas Sanjeev, Garyfallidis, Eleftherios

“…Segmentation of brain tissue in diffusion MRI image space has some unique advantages. A novel segmentation method using the direction-averaged diffusion…”
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Learning Representations of Diffusion Magnetic Resonance Images by Fadnavis, Shreyas

“…The thesis proposes novel representation learning methods using self-supervised learning, topological optimization and multi-view learning. The methods and…”
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754 ARGES: AN AI-CENTRIC TOOLBOX FOR IBD CLINICAL TRIAL RESEARCH AND DEVELOPMENT by Damasceno, Pablo F., Chaitanya, Krishna, Mobadersany, Pooya, Parmar, Chaitanya, Fadnavis, Shreyas, Lutnick, Brendon, Ghanem, Louis R., Cula, Gabriela O., Mansi, Tommaso, Standish, Kristopher

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On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge by De Luca, Alberto, Ianus, Andrada, Leemans, Alexander, Palombo, Marco, Shemesh, Noam, Zhang, Hui, Alexander, Daniel C., Nilsson, Markus, Froeling, Martijn, Biessels, Geert-Jan, Zucchelli, Mauro, Frigo, Matteo, Albay, Enes, Sedlar, Sara, Alimi, Abib, Deslauriers-Gauthier, Samuel, Deriche, Rachid, Fick, Rutger, Afzali, Maryam, Pieciak, Tomasz, Bogusz, Fabian, Aja-Fernández, Santiago, Özarslan, Evren, Jones, Derek K., Chen, Haoze, Jin, Mingwu, Zhang, Zhijie, Wang, Fengxiang, Nath, Vishwesh, Parvathaneni, Prasanna, Morez, Jan, Sijbers, Jan, Jeurissen, Ben, Fadnavis, Shreyas, Endres, Stefan, Rokem, Ariel, Garyfallidis, Eleftherios, Sanchez, Irina, Prchkovska, Vesna, Rodrigues, Paulo, Landman, Bennet A., Schilling, Kurt G.

“…Diffusion MRI (dMRI) has become an invaluable tool to assess the microstructural organization of brain tissue. Depending on the specific acquisition settings,…”
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QSIPrep: An integrative platform for preprocessing and reconstructing diffusion MRI by Cieslak, Matthew, Cook, Philip A., He, Xiaosong, Yeh, Fang-Cheng, Dhollander, Thijs, Adebimpe, Azeez, Aguirre, Geoffrey K., Bassett, Danielle S., Betzel, Richard F., Bourque, Josiane, Cabral, Laura M., Davatzikos, Christos, Detre, John A., Earl, Eric, Elliott, Mark A., Fadnavis, Shreyas, Fair, Damien A., Foran, Will, Fotiadis, Panagiotis, Garyfallidis, Eleftherios, Giesbrecht, Barry, Gur, Ruben C., Gur, Raquel E., Kelz, Max, Keshavan, Anisha, Larsen, Bart S., Luna, Beatriz, Mackey, Allyson P., Milham, Michael P., Oathes, Desmond J., Perrone, Anders, Pines, Adam R., Roalf, David R., Richie-Halford, Adam, Rokem, Ariel, Sydnor, Valerie J., Tapera, Tinashe M., Tooley, Ursula A., Vettel, Jean M., Yeatman, Jason D., Grafton, Scott T., Satterthwaite, Theodore D.

“…Diffusion-weighted magnetic resonance imaging (dMRI) is the primary method for noninvasively studying the organization of white matter in the human brain. Here…”
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Patch2Self2: Self-Supervised Denoising on Coresets via Matrix Sketching by Fadnavis, Shreyas, Chowdhury, Agniva, Batson, Joshua, Drineas, Petros, Garyfallidis, Eleftherios

“…Diffusion MRI (dMRI) non-invasively maps brain white matter, yet necessitates denoising due to low signal-to-noise ratios. Patch2Self (P2S), employing…”
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EVAC+: Multi-scale V-net with Deep Feature CRF Layers for Brain Extraction by Park, Jong Sung, Fadnavis, Shreyas, Garyfallidis, Eleftherios

“…Brain extraction is one of the first steps of pre-processing 3D brain MRI data and a prerequisite for any forthcoming brain imaging analyses. However, it is…”
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Patch2Self: Denoising Diffusion MRI with Self-Supervised Learning by Fadnavis, Shreyas, Batson, Joshua, Garyfallidis, Eleftherios

“…Thirty-fourth Conference on Neural Information Processing Systems, 2020 Diffusion-weighted magnetic resonance imaging (DWI) is the only noninvasive method for…”
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NUQ: A Noise Metric for Diffusion MRI via Uncertainty Discrepancy Quantification by Fadnavis, Shreyas, Sjölund, Jens, Eklund, Anders, Garyfallidis, Eleftherios

“…Diffusion MRI (dMRI) is the only non-invasive technique sensitive to tissue micro-architecture, which can, in turn, be used to reconstruct tissue…”
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Arges: Spatio-Temporal Transformer for Ulcerative Colitis Severity Assessment in Endoscopy Videos by Chaitanya, Krishna, Damasceno, Pablo F, Fadnavis, Shreyas, Mobadersany, Pooya, Parmar, Chaitanya, Scherer, Emily, Zemlianskaia, Natalia, Surace, Lindsey, Ghanem, Louis R, Cula, Oana Gabriela, Mansi, Tommaso, Standish, Kristopher

“…Accurate assessment of disease severity from endoscopy videos in ulcerative colitis (UC) is crucial for evaluating drug efficacy in clinical trials. Severity…”
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PainPoints: A Framework for Language-based Detection of Chronic Pain and Expert-Collaborative Text-Summarization by Fadnavis, Shreyas, Dhurandhar, Amit, Norel, Raquel, Reinen, Jenna M, Agurto, Carla, Secchettin, Erica, Schweiger, Vittorio, Perini, Giovanni, Cecchi, Guillermo

“…Chronic pain is a pervasive disorder which is often very disabling and is associated with comorbidities such as depression and anxiety. Neuropathic Pain (NP)…”
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ThetA -- fast and robust clustering via a distance parameter by Garyfallidis, Eleftherios, Fadnavis, Shreyas, Park, Jong Sung, Chandio, Bramsh Qamar, Guaje, Javier, Koudoro, Serge, Anousheh, Nasim

“…Clustering is a fundamental problem in machine learning where distance-based approaches have dominated the field for many decades. This set of problems is…”
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Fitting IVIM with Variable Projection and Simplicial Optimization by Fadnavis, Shreyas, Farooq, Hamza, Afzali, Maryam, Lenglet, Christoph, Georgiou, Tryphon, Cheng, Hu, Newman, Sharlene, Ahmed, Shahnawaz, Henriques, Rafael Neto, Peterson, Eric, Koudoro, Serge, Rokem, Ariel, Garyfallidis, Eleftherios

“…Fitting multi-exponential models to Diffusion MRI (dMRI) data has always been challenging due to various underlying complexities. In this work, we introduce a…”
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