Search Results - "Etter, Paul D."

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags by Hohenlohe, Paul A, Bassham, Susan, Etter, Paul D, Stiffler, Nicholas, Johnson, Eric A, Cresko, William A

“…Next-generation sequencing technology provides novel opportunities for gathering genome-scale sequence data in natural populations, laying the empirical…”
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Rapid SNP discovery and genetic mapping using sequenced RAD markers by Baird, Nathan A, Etter, Paul D, Atwood, Tressa S, Currey, Mark C, Shiver, Anthony L, Lewis, Zachary A, Selker, Eric U, Cresko, William A, Johnson, Eric A

“…Single nucleotide polymorphism (SNP) discovery and genotyping are essential to genetic mapping. There remains a need for a simple, inexpensive platform that…”
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SNP discovery and genotyping for evolutionary genetics using RAD sequencing by Etter, Paul D, Bassham, Susan, Hohenlohe, Paul A, Johnson, Eric A, Cresko, William A

“…Next-generation sequencing technologies are revolutionizing the field of evolutionary biology, opening the possibility for genetic analysis at scales not…”
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Local de novo assembly of RAD paired-end contigs using short sequencing reads by Etter, Paul D, Preston, Jessica L, Bassham, Susan, Cresko, William A, Johnson, Eric A

“…Despite the power of massively parallel sequencing platforms, a drawback is the short length of the sequence reads produced. We demonstrate that short reads…”
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The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan by Valenzano, Dario Riccardo, Benayoun, Bérénice A., Singh, Param Priya, Zhang, Elisa, Etter, Paul D., Hu, Chi-Kuo, Clément-Ziza, Mathieu, Willemsen, David, Cui, Rongfeng, Harel, Itamar, Machado, Ben E., Yee, Muh-Ching, Sharp, Sabrina C., Bustamante, Carlos D., Beyer, Andreas, Johnson, Eric A., Brunet, Anne

“…Lifespan is a remarkably diverse trait ranging from a few days to several hundred years in nature, but the mechanisms underlying the evolution of lifespan…”
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From promise to practice: pairing non-invasive sampling with genomics in conservation by Russello, Michael A, Waterhouse, Matthew D, Etter, Paul D, Johnson, Eric A

“…Conservation genomics has become an increasingly popular term, yet it remains unclear whether the non-invasive sampling that is essential for many…”
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Geographic destiny trumps taxonomy in the Roundtail Chub, Gila robusta species complex (Teleostei, Leuciscidae) by Suchocki, Christopher R., Ka‘apu-Lyons, Cassie, Copus, Joshua M., Walsh, Cameron A. J., Lee, Anne M., Carter, Julie Meka, Johnson, Eric A., Etter, Paul D., Forsman, Zac H., Bowen, Brian W., Toonen, Robert J.

“…The Gila robusta species complex in the lower reaches of the Colorado River includes three nominal and contested species ( G. robusta, G. intermedia, and G…”
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Genome-wide genetic marker discovery and genotyping using next-generation sequencing by Davey, John W, Hohenlohe, Paul A, Etter, Paul D, Boone, Jason Q, Catchen, Julian M, Blaxter, Mark L

“…Key Points New methods that make use of high-throughput sequencing are enabling the simultaneous discovery and sequencing of thousands of genetic markers…”
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Phylogeographic Analyses of American Black Bears (Ursus americanus) Suggest Four Glacial Refugia and Complex Patterns of Postglacial Admixture by Puckett, Emily E, Etter, Paul D, Johnson, Eric A, Eggert, Lori S

“…Studies of species with continental distributions continue to identify intraspecific lineages despite continuous habitat. Lineages may form due to isolation by…”
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Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent by Poelstra, Jelmer W, Salmona, Jordi, Tiley, George P, Schüßler, Dominik, Blanco, Marina B, Andriambeloson, Jean B, Bouchez, Olivier, Campbell, C Ryan, Etter, Paul D, Hohenlohe, Paul A, Hunnicutt, Kelsie E, Iribar, Amaia, Johnson, Eric A, Kappeler, Peter M, Larsen, Peter A, Manzi, Sophie, Ralison, JosÉ M, Randrianambinina, Blanchard, Rasoloarison, Rodin M, Rasolofoson, David W, Stahlke, Amanda R, Weisrock, David W, Williams, Rachel C, Chikhi, LounÈs, Louis, Edward E, Radespiel, Ute, Yoder, Anne D

“…Abstract Mouse lemurs (Microcebus) are a radiation of morphologically cryptic primates distributed throughout Madagascar for which the number of recognized…”
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Synaptic and genomic responses to JNK and AP-1 signaling in Drosophila neurons by Etter, Paul D, Narayanan, Radhakrishnan, Navratilova, Zaneta, Patel, Chirag, Bohmann, Dirk, Jasper, Heinrich, Ramaswami, Mani

“…The transcription factor AP-1 positively controls synaptic plasticity at the Drosophila neuromuscular junction. Although in motor neurons, JNK has been shown…”
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A southern African origin and cryptic structure in the highly mobile plains zebra by Pedersen, Casper-Emil T., Albrechtsen, Anders, Etter, Paul D., Johnson, Eric A., Orlando, Ludovic, Chikhi, Lounes, Siegismund, Hans R., Heller, Rasmus

“…The plains zebra ( Equus quagga ) is an ecologically important species of the African savannah. It is also one of the most numerous and widely distributed…”
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RAD paired-end sequencing for local de novo assembly and SNP discovery in non-model organisms by Etter, Paul D, Johnson, Eric

“…Restriction-site Associated DNA (RAD) markers are rapidly becoming a standard for SNP discovery and genotyping studies even in organisms without a sequenced…”
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Genomic Resources Notes Accepted 1 December 2014 - 31 January 2015 by Blanchet, Simon, Bouchez, Olivier, Chapman, Colin A., Etter, Paul D., Goldberg, Tony L., Johnson, Eric A., Jones, James H., Loot, Géraldine, Omeja, Patrick A., Rey, Olivier, Ruiz-Lopez, Maria Jose, Switzer, William M., Ting, Nelson

“…This article documents the public availability of (i) transcriptome sequence data and assembly for the rostrum dace (Leuciscus burdigalensis) naturally…”
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The ups and downs of daily life: Profiling circadian gene expression in Drosophila by Etter, Paul D., Ramaswami, Mani

“…Circadian rhythms are responsible for 24‐hour oscillations in diverse biological processes. While the central genes governing circadian pacemaker rhythmicity…”
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Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags: e1000862 by Hohenlohe, Paul A, Bassham, Susan, Etter, Paul D, Stiffler, Nicholas, Johnson, Eric A, Cresko, William A

“…Next-generation sequencing technology provides novel opportunities for gathering genome-scale sequence data in natural populations, laying the empirical…”
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