Search Results - "Environmental DNA (Hoboken, N.J.)"

A validation scale to determine the readiness of environmental DNA assays for routine species monitoring by Thalinger, Bettina, Deiner, Kristy, Harper, Lynsey R., Rees, Helen C., Blackman, Rosetta C., Sint, Daniela, Traugott, Michael, Goldberg, Caren S., Bruce, Kat

“…The use of environmental DNA (eDNA) analysis for species monitoring requires rigorous validation—from field sampling to the analysis of PCR‐based results—for…”
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microDecon: A highly accurate read‐subtraction tool for the post‐sequencing removal of contamination in metabarcoding studies by McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., Zenger, Kyall R.

“…Contamination is a ubiquitous problem in microbiome research and can skew results, especially when small amounts of target DNA are available. Nevertheless, no…”
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Improved freshwater macroinvertebrate detection from environmental DNA through minimized nontarget amplification by Leese, Florian, Sander, Mandy, Buchner, Dominik, Elbrecht, Vasco, Haase, Peter, Zizka, Vera M. A.

“…DNA metabarcoding of freshwater communities typically relies on PCR amplification of a fragment of the mitochondrial cytochrome c oxidase I (COI) gene with…”
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Reporting the limits of detection and quantification for environmental DNA assays by Klymus, Katy E., Merkes, Christopher M., Allison, Michael J., Goldberg, Caren S., Helbing, Caren C., Hunter, Margaret E., Jackson, Craig A., Lance, Richard F., Mangan, Anna M., Monroe, Emy M., Piaggio, Antoinette J., Stokdyk, Joel P., Wilson, Chris C., Richter, Catherine A.

“…Background Environmental DNA (eDNA) analysis is increasingly being used to detect the presence and relative abundance of rare species, especially invasive or…”
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Making environmental DNA (eDNA) biodiversity records globally accessible by Berry, Oliver, Jarman, Simon, Bissett, Andrew, Hope, Michael, Paeper, Corinna, Bessey, Cindy, Schwartz, Michael K., Hale, Josh, Bunce, Michael

“…Environmental DNA (eDNA) metabarcoding, where specific DNA markers (barcodes) are purified from the environment, sequenced, and used to identify organisms, is…”
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Quantifying biodiversity using eDNA from water bodies: General principles and recommendations for sampling designs by Altermatt, Florian, Carraro, Luca, Antonetti, Manuel, Albouy, Camille, Zhang, Yan, Lyet, Arnaud, Zhang, Xiaowei, Pellissier, Loïc

“…Reliable and comparable estimates of biodiversity are the foundation for understanding ecological systems and informing policy and decision‐making, especially…”
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The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection by Tsuji, Satsuki, Takahara, Teruhiko, Doi, Hideyuki, Shibata, Naoki, Yamanaka, Hiroki

“…The field of environmental DNA (eDNA) analysis has rapidly developed over the past decade and the technique has become widely used for detecting aquatic…”
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Plant–animal interactions in the era of environmental DNA (eDNA)—A review by Banerjee, Pritam, Stewart, Kathryn A., Antognazza, Caterina M., Bunholi, Ingrid V., Deiner, Kristy, Barnes, Matthew A., Saha, Santanu, Verdier, Héloïse, Doi, Hideyuki, Maity, Jyoti Prakash, Chan, Michael W. Y., Chen, Chien Yen

“…Plant–animal interactions (PAI) represent major channels of energy transfer through ecosystems, where both positive and antagonistic interactions…”
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An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols by Minamoto, Toshifumi, Miya, Masaki, Sado, Tetsuya, Seino, Satoquo, Doi, Hideyuki, Kondoh, Michio, Nakamura, Keigo, Takahara, Teruhiko, Yamamoto, Satoshi, Yamanaka, Hiroki, Araki, Hitoshi, Iwasaki, Wataru, Kasai, Akihide, Masuda, Reiji, Uchii, Kimiko

“…Environmental DNA (eDNA)‐based assessments of macro‐organisms have now become an essential approach for biomonitoring. eDNA survey methods have a number of…”
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Density‐independent prey choice, taxonomy, life history, and web characteristics determine the diet and biocontrol potential of spiders (Linyphiidae and Lycosidae) in cereal crops by Cuff, Jordan P., Tercel, Maximillian P.T.G., Drake, Lorna E., Vaughan, Ian P., Bell, James R., Orozco‐terWengel, Pablo, Müller, Carsten T., Symondson, William O.C.

“…Spiders are among the dominant invertebrate predators in agricultural systems and are significant regulators of insect pests. The precise dynamics of…”
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Nanopore short‐read sequencing: A quick, cost‐effective and accurate method for DNA metabarcoding by van der Reis, Aimee L., Beckley, Lynnath E., Olivar, M. Pilar, Jeffs, Andrew G.

“…Dietary and predator–prey studies are more frequently relying on DNA metabarcoding methods, typically achieving results that have a better taxonomic resolution…”
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General principles for assignments of communities from eDNA: Open versus closed taxonomic databases by Blackman, Rosetta C., Walser, Jean‐Claude, Rüber, Lukas, Brantschen, Jeanine, Villalba, Soraya, Brodersen, Jakob, Seehausen, Ole, Altermatt, Florian

“…Metabarcoding of environmental DNA (eDNA) is a powerful tool for describing biodiversity, such as finding keystone species or detecting invasive species in…”
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False‐negative detections from environmental DNA collected in the presence of large numbers of killer whales (Orcinus orca) by Pinfield, Róisín, Dillane, Eileen, Runge, Anne Kathrine W., Evans, Alice, Mirimin, Luca, Niemann, Jonas, Reed, Thomas E., Reid, David G., Rogan, Emer, Samarra, Filipa I. P., Sigsgaard, Eva Egelyng, Foote, Andrew D.

“…While environmental DNA (eDNA) is becoming increasingly established in biodiversity monitoring of freshwater ecosystems, the use of eDNA surveys in the marine…”
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Comparing CRISPR‐Cas and qPCR eDNA assays for the detection of Atlantic salmon (Salmo salar L.) by Williams, Molly‐Ann, Hernandez, Cecilia, O'Sullivan, Antóin M., April, Julien, Regan, Fiona, Bernatchez, Louis, Parle‐McDermott, Anne

“…Molecular techniques offer sensitive, specific, noninvasive monitoring of target species from a variety of environmental samples. We recently developed a…”
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Testing the effectiveness of environmental DNA (eDNA) to quantify larval amphibian abundance by Breton, Brie‐Anne A., Beaty, Lynne, Bennett, Amanda M., Kyle, Christopher J., Lesbarrères, David, Vilaça, Sibelle Torres, Wikston, Madison J. H., Wilson, Chris C., Murray, Dennis L.

“…Environmental DNA (eDNA) monitoring is rapidly becoming an established approach for detecting the presence of aquatic organisms and may also be useful for…”
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Meta‐analysis supports further refinement of eDNA for monitoring aquatic species‐specific abundance in nature by Yates, Matthew C., Fraser, Dylan J., Derry, Alison M.

“…The use of eDNA to detect the presence/absence of rare or invasive species is well documented and its use in biodiversity monitoring is expanding. Preliminary…”
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DNA metabarcoding in diet studies: Unveiling ecological aspects in aquatic and terrestrial ecosystems by Sousa, Lara Loureiro, Silva, Sofia Marques, Xavier, Raquel

“…Effective conservation of species and ecosystems requires the understanding of important ecological traits, such as dietary habits, food webs, and trophic…”
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Arctic nekton uncovered by eDNA metabarcoding: Diversity, potential range expansions, and pelagic‐benthic coupling by Merten, Véronique, Puebla, Oscar, Bayer, Till, Reusch, Thorsten B. H., Fuss, Janina, Stefanschitz, Julia, Metfies, Katja, Stauffer, Julian B., Hoving, Henk‐Jan

“…The Arctic Ocean is home to a unique fauna that is disproportionately affected by global warming but that remains under‐studied. Due to their high mobility and…”
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Methodological trends and perspectives of animal dietary studies by noninvasive fecal DNA metabarcoding by Ando, Haruko, Mukai, Haruka, Komura, Taketo, Dewi, Tungga, Ando, Masaki, Isagi, Yuji

“…Fine‐scale estimation of trophic interactions is an important subject in the field of ecology. Diet analysis based on fecal DNA metabarcoding has been accepted…”
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Temporal Study of Environmental DNA and Acoustic Data Reveals Coexistence of Sympatric Bat Species in a North American Ecosystem by Suresh, Vrinda M., Hébert, Trevor, Verster, Kirsten Isabel, Hadly, Elizabeth A.

“…ABSTRACT Bats are a species‐rich mammalian order that provide a host of ecosystem services, but presently face threats from habitat loss, disease, climate…”
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