Search Results - "Eng, K"

Comet: An open-source MS/MS sequence database search tool by Eng, Jimmy K., Jahan, Tahmina A., Hoopmann, Michael R.

“…Proteomics research routinely involves identifying peptides and proteins via MS/MS sequence database search. Thus the database search engine is an integral…”
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Pan-cancer analysis of transcriptional metabolic dysregulation using The Cancer Genome Atlas by Rosario, S. R., Long, M. D., Affronti, H. C., Rowsam, A. M., Eng, K. H., Smiraglia, D. J.

“…Understanding metabolic dysregulation in different disease settings is vital for the safe and effective incorporation of metabolism-targeted therapeutics in…”
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Reduced Sensitivity to Charge Noise in Semiconductor Spin Qubits via Symmetric Operation by Reed, M D, Maune, B M, Andrews, R W, Borselli, M G, Eng, K, Jura, M P, Kiselev, A A, Ladd, T D, Merkel, S T, Milosavljevic, I, Pritchett, E J, Rakher, M T, Ross, R S, Schmitz, A E, Smith, A, Wright, J A, Gyure, M F, Hunter, A T

“…We demonstrate improved operation of exchange-coupled semiconductor quantum dots by substantially reducing the sensitivity of exchange operations to charge…”
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Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics by Schweppe, Devin K, Eng, Jimmy K, Yu, Qing, Bailey, Derek, Rad, Ramin, Navarrete-Perea, Jose, Huttlin, Edward L, Erickson, Brian K, Paulo, Joao A, Gygi, Steven P

“…Multiplexed quantitative analyses of complex proteomes enable deep biological insight. While a multitude of workflows have been developed for multiplexed…”
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Strengths and limitations of diagnostic tools for endometriosis and relevance in diagnostic test accuracy research by Pascoal, E., Wessels, J. M., Aas‐Eng, M. K., Abrao, M. S., Condous, G., Jurkovic, D., Espada, M., Exacoustos, C., Ferrero, S., Guerriero, S., Hudelist, G., Malzoni, M., Reid, S., Tang, S., Tomassetti, C., Singh, S. S., Van den Bosch, T., Leonardi, M.

“…Endometriosis is a chronic systemic disease that can cause pain, infertility and reduced quality of life. Diagnosing endometriosis remains challenging, which…”
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iSIM: An integrated design method for commercializing service innovation by Chew, Eng K.

“…Service innovation is focused on customer value creation. At its core, customer centric service innovation is technology-enabled, human-centered, and…”
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Extending Comet for Global Amino Acid Variant and Post‐Translational Modification Analysis Using the PSI Extended FASTA Format by Eng, Jimmy K., Deutsch, Eric W.

“…Protein identification by tandem mass spectrometry sequence database searching is a standard practice in many proteomics laboratories. The de facto standard…”
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iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates by Shteynberg, David, Deutsch, Eric W., Lam, Henry, Eng, Jimmy K., Sun, Zhi, Tasman, Natalie, Mendoza, Luis, Moritz, Robert L., Aebersold, Ruedi, Nesvizhskii, Alexey I.

“…The combination of tandem mass spectrometry and sequence database searching is the method of choice for the identification of peptides and the mapping of…”
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In Vivo Conformational Dynamics of Hsp90 and Its Interactors by Chavez, Juan D, Schweppe, Devin K, Eng, Jimmy K, Bruce, James E

“…Hsp90 belongs to a family of some of the most highly expressed heat shock proteins that function as molecular chaperones to protect the proteome not only from…”
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guided tour of the Trans-Proteomic Pipeline by Deutsch, Eric W, Mendoza, Luis, Shteynberg, David, Farrah, Terry, Lam, Henry, Tasman, Natalie, Sun, Zhi, Nilsson, Erik, Pratt, Brian, Prazen, Bryan, Eng, Jimmy K, Martin, Daniel B, Nesvizhskii, Alexey I, Aebersold, Ruedi

“…The Trans-Proteomic Pipeline (TPP) is a suite of software tools for the analysis of MS/MS data sets. The tools encompass most of the steps in a proteomic data…”
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A Face in the Crowd: Recognizing Peptides Through Database Search by Eng, Jimmy K., Searle, Brian C., Clauser, Karl R., Tabb, David L.

“…Peptide identification via tandem mass spectrometry sequence database searching is a key method in the array of tools available to the proteomics researcher…”
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Microfoundations of Organizational Agility: A Socio-Technical Perspective by Crick, Charles, Chew, Eng K.

“…To be agile, organization need to be able to quickly reconfigure their internal resources in order to respond to changes occurring in their environment. In…”
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Lesion‐to‐anal‐verge distance in rectosigmoid endometriosis on transvaginal sonography vs magnetic resonance imaging: prospective study by Aas‐Eng, M. K., Young, V. S., Dormagen, J. B., Pripp, A. H., Hudelist, G., Lieng, M.

“…ABSTRACT Objectives To compare transvaginal sonography (TVS) and magnetic resonance imaging (MRI) with intraoperative measurement (IOM) using a rectal probe in…”
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Transvaginal sonography accurately measures lesion‐to‐anal‐verge distance in women with deep endometriosis of the rectosigmoid by Aas‐Eng, M. K., Dauser, B., Lieng, M., Diep, L. M., Leonardi, M., Condous, G., Hudelist, G.

“…ABSTRACT Objectives First, to investigate the accuracy of transvaginal sonography (TVS) for presurgical evaluation of the distance between the most caudal part…”
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Transvaginal sonography determines accurately extent of infiltration of rectosigmoid deep endometriosis by Aas‐Eng, M. K., Lieng, M., Dauser, B., Diep, L. M., Leonardi, M., Condous, G., Hudelist, G.

“…ABSTRACT Objective To investigate the agreement of measurements of the three diameters of rectosigmoid deep endometriosis (DE) lesions between presurgical…”
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Learning curve for detection of pelvic parts of ureters by transvaginal sonography: feasibility study by Aas‐Eng, M. K., Salama, M., Sevelda, U., Ruesch, C., Nemeth, Z., Hudelist, G.

“…ABSTRACT Objective To investigate how many examinations it takes to be able to identify the pelvic parts of the ureters on transvaginal sonography (TVS)…”
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Sensitivity of Intermittent Streams to Climate Variations in the USA by Eng, K., Wolock, D. M., Dettinger, M. D.

“…There is a great deal of interest in the literature on streamflow changes caused by climate change because of the potential negative effects on aquatic biota…”
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Texture-based classification of liver fibrosis using MRI by House, Michael J., Bangma, Sander J., Thomas, Mervyn, Gan, Eng K., Ayonrinde, Oyekoya T., Adams, Leon A., Olynyk, John K., St. Pierre, Tim G.

“…Purpose To investigate the ability of texture analysis of MRI images to stage liver fibrosis. Current noninvasive approaches for detecting liver fibrosis have…”
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Prevalence and intensity of Onchocerca volvulus infection and efficacy of ivermectin in endemic communities in Ghana: a two-phase epidemiological study by Osei-Atweneboana, Mike Y, MPhil, Eng, Jeffrey KL, PhD, Boakye, Daniel A, PhD, Gyapong, John O, PhD, Prichard, Roger K, Prof

“…Summary Background Ivermectin has been used for onchocerciasis control since 1987. Because of the long-term use of this drug and the development of resistance…”
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Late Stricture from Marginal Ulceration after Roux-en-Y Gastric Bypass: Endoscopic Complications and Surgical Management by Lye, Tiffany Jian Ying, Eng, Alvin K. H.

“…Inflammation and healing of marginal ulceration at the GJ anastomosis results in scar tissue formation, and this can lead to the late development of a chronic…”
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