Search Results - "Emond‐Rheault, Jean‐Guillaume"
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Genomics of antibiotic‐resistance prediction in Pseudomonas aeruginosa
Published in Annals of the New York Academy of Sciences (01-01-2019)“…Antibiotic resistance is a worldwide health issue spreading quickly among human and animal pathogens, as well as environmental bacteria. Misuse of antibiotics…”
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Genomic and phenotypic analysis of SspH1 identifies a new Salmonella effector, SspH3
Published in Molecular microbiology (01-04-2022)“…Salmonella is a major foodborne pathogen and is responsible for a range of diseases. Not all Salmonella contributes to severe health outcomes as there is a…”
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Phenomic and genomic approaches to studying the inhibition of multiresistant Salmonella enterica by microcin J25
Published in Environmental microbiology (01-07-2020)“…Summary In livestock production, antibiotics are used to promote animal growth, control infections and thereby increase profitability. This practice has led to…”
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Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools
Published in FEMS microbiology letters (01-07-2018)“…Pseudomonas aeruginosa is an important opportunistic pathogen, especially in the context of infections of cystic fibrosis (CF). In order to facilitate…”
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A megaplasmid family driving dissemination of multidrug resistance in Pseudomonas
Published in Nature communications (13-03-2020)“…Multidrug resistance (MDR) represents a global threat to health. Here, we used whole genome sequencing to characterise Pseudomonas aeruginosa MDR clinical…”
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Plasmid composition in Aeromonas salmonicida subsp. salmonicida 01-B526 unravels unsuspected type three secretion system loss patterns
Published in BMC genomics (12-07-2017)“…Aeromonas salmonicida subsp. salmonicida is a ubiquitous psychrophilic waterborne bacterium and a fish pathogen. The numerous mobile elements, especially…”
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Vitamin B12 Uptake by the Gut Commensal Bacteria Bacteroides thetaiotaomicron Limits the Production of Shiga Toxin by Enterohemorrhagic Escherichia coli
Published in Toxins (05-01-2016)“…Enterohemorrhagic Escherichia coli (EHEC) are foodborne pathogens responsible for the development of bloody diarrhea and renal failure in humans. Many…”
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AsaGEI2b: a new variant of a genomic island identified in the Aeromonas salmonicida subsp. salmonicida JF3224 strain isolated from a wild fish in Switzerland
Published in FEMS microbiology letters (01-07-2015)“…Aeromonas salmonicida subsp. salmonicida is the causal agent of furunculosis in salmonids. We recently identified a group of genomic islands (AsaGEI) in this…”
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Prophage Integrase Typing Is a Useful Indicator of Genomic Diversity in Salmonella enterica
Published in Frontiers in microbiology (10-07-2017)“…is a bacterial species that is a major cause of illness in humans and food-producing animals. exhibits considerable inter-serovar diversity, as evidenced by…”
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Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping
Published in Frontiers in microbiology (04-05-2018)“…Non-typhoidal is a leading cause of foodborne illness worldwide. Prompt and accurate identification of the sources of responsible for disease outbreaks is…”
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Bacteriophage-Induced Lipopolysaccharide Mutations in Escherichia coli Lead to Hypersensitivity to Food Grade Surfactant Sodium Dodecyl Sulfate
Published in Antibiotics (Basel) (28-08-2020)“…Bacteriophages (phages) are considered as one of the most promising antibiotic alternatives in combatting bacterial infectious diseases. However, one concern…”
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The Salmonella enterica Plasmidome as a Reservoir of Antibiotic Resistance
Published in Microorganisms (Basel) (08-07-2020)“…The emergence of multidrug-resistant bacterial strains worldwide has become a serious problem for public health over recent decades. The increase in…”
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Combining Whole-Genome Sequencing and Multimodel Phenotyping To Identify Genetic Predictors of Salmonella Virulence
Published in mSphere (10-06-2020)“…Salmonella species are bacteria that are a major source of foodborne disease through contamination of a diversity of foods, including meat, eggs, fruits, nuts,…”
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The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity
Published in Genome biology and evolution (01-01-2019)“…Abstract The huge increase in the availability of bacterial genomes led us to a point in which we can investigate and query pan-genomes, for example, the full…”
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Whole-Genome Sequencing of Lactobacillus Species from Two Commercial Probiotic Products
Published in Genome announcements (Washington, DC) (09-11-2017)“…Eight strains, each intrinsically resistant to an antibiotic, were isolated from two commercial probiotic products. Whole-genome sequencing identified two…”
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Evolutionary divergent clusters of transcribed extinct truncated retroposons drive low mRNA expression and developmental regulation in the protozoan Leishmania
Published in BMC biology (29-10-2024)“…The Leishmania genome harbors formerly active short interspersed degenerated retroposons (SIDERs) representing the largest family of repetitive elements among…”
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A Pan-Genomic Approach to Understand the Basis of Host Adaptation in Achromobacter
Published in Genome biology and evolution (01-04-2017)“…Over the past decade, there has been a rising interest in Achromobacter sp., an emerging opportunistic pathogen responsible for nosocomial and cystic fibrosis…”
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Antibiotic resistance due to an unusual ColE1-type replicon plasmid in Aeromonas salmonicida
Published in Microbiology (Society for General Microbiology) (01-06-2016)“…Aeromonas salmonicida subsp. salmonicida is a fish pathogen known to have a rich plasmidome. In the present study, we discovered an isolate of this bacterium…”
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Salmonella enterica subsp. enterica virulence potential can be linked to higher survival within a dynamic in vitro human gastrointestinal model
Published in Food microbiology (01-02-2022)“…Salmonella enterica subsp. enterica is one of the leading causes of human foodborne infections and several outbreaks are now associated with the consumption of…”
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Genomic characterisation of environmental Pseudomonas aeruginosa isolated from dental unit waterlines revealed the insertion sequence ISPa11 as a chaotropic element
Published in FEMS microbiology ecology (01-09-2017)“…The bacterium Pseudomonas aeruginosa is well known to have a remarkable adaptive capacity allowing it to colonise many environments. A recent study on…”
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