Search Results - "Eisenmenger, F"

‘String Test’ for Hypermucoviscous Klebsiella pneumoniae by Eisenmenger, Elizabeth F., Guajardo, Emmanuel, Finch, Natalie, Atmar, Robert L., Sargsyan, Zaven

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Modeling studies of the change in conformation required for cleavage of limited proteolytic sites by Hubbard, S.J., Eisenmenger, F, Thornton, J.M.

“…Previous analyses of limited proteolytic sites within native, folded protein structures have shown that a significant conformational change is required in…”
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Variation of the Energy Landscape of a Small Peptide under a Change from the ECEPP/2 Force Field to ECEPP/3 by Eisenmenger, Frank, Hansmann, Ulrich H. E

“…The multicanonical ansatz is used to study variations in the energy landscape of a small peptide, Met-enkephalin, under a change from the ECEPP/2 force field…”
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A fast unbiased comparison of protein structures by means of the Needleman-Wunsch algorithm by Rose, J, Eisenmenger, F

“…A fast dynamic programming algorithm for the spatial superposition of protein structure without prior knowledge of an initial alignment has been developed. The…”
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An enhanced version of SMMP—open-source software package for simulation of proteins by Eisenmenger, Frank, Hansmann, Ulrich H.E., Hayryan, Shura, Hu, Chin-Kun

“…We describe a revised and updated version of the program package SMMP ( Simple Molecular Mechanics for Proteins) [F. Eisenmenger, U.H.E. Hansmann, Sh. Hayryan,…”
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[SMMP] A modern package for simulation of proteins by Eisenmenger, Frank, Hansmann, Ulrich H.E., Hayryan, Shura, Hu, Chin-Kun

“…A Fortran package is presented which provides useful routines for molecular simulation of proteins within the standard geometry model. Highly efficient…”
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Interaction of the Antimicrobial Peptide Cyclo(RRWWRF) with Membranes by Molecular Dynamics Simulations by Appelt, Christian, Eisenmenger, Frank, Kühne, Ronald, Schmieder, Peter, Söderhäll, J. Arvid

“…Antimicrobial peptides have gained a lot of interest in recent years due to their potential use as a new generation of antibiotics. It is believed that this…”
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Third type of secondary structure: noncooperative mobile conformation. Protein Data Bank analysis by Adzhubei, A A, Eisenmenger, F, Tumanyan, V G, Zinke, M, Brodzinski, S, Esipova, N G

“…Analysis of 68 proteins from Protein Data Bank disclosed a new widely spread type of the secondary structure that is designated as mobile (M-) conformation…”
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Hydration of B-DNA: comparison between the water network around poly(dG).poly(dC) and poly(dG-dC).poly(dG-dC) on the basis of Monte Carlo computations by Eisenhaber, F, Tumanyan, V G, Eisenmenger, F, Gunia, W

“…A computational method is elaborated for studying the water environment around regular polynucleotide duplexes; it allows rigorous structural information on…”
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Approaching a complete classification of protein secondary structure by Adzhubei, A A, Eisenmenger, F, Tumanyan, V G, Zinke, M, Brodzinski, S, Esipova, N G

“…A complete classification of types of the protein secondary structure is developed on the basis of computer analysis of the crystallographic structural data…”
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An assessment of COMPOSER: a rule-based approach to modelling protein structure by Topham, C M, Thomas, P, Overington, J P, Johnson, M S, Eisenmenger, F, Blundell, T L

“…We describe COMPOSER, a computer program for modelling proteins which uses three-dimensional structures defined by X-ray analysis together with rules defined…”
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A method to configure protein side-chains from the main-chain trace in homology modelling by Eisenmenger, F, Argos, P, Abagyan, R

“…Protein homology modelling typically involves the prediction of side-chain conformations in the modelled protein while assuming a main-chain trace taken from a…”
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Global minimum configuration of a small peptide for the ECEPP/2 and ECEPP/3 force fields by Eisenmenger, Frank, Hansmann, Ulrich H.E.

“…We use a multicanonical ansatz to search for low energy conformations of a small peptide, Met-enkephalin. We found that the global minimum conformation of…”
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Fragment ranking in modelling of protein structure. Conformationally constrained environmental amino acid substitution tables by Topham, C M, McLeod, A, Eisenmenger, F, Overington, J P, Johnson, M S, Blundell, T L

“…Conformationally constrained environment-dependent amino acid residue substitution tables have been constructed from a database comprising 33 homologous…”
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Development of lithotripter technology by Eisenmenger, Wolfgang F. W.

“…‘‘Squeezing’’ of the stone or cirumferential pressure of the wave propagating at the outside of the stone in the liquid or tissue results in fragmentation in…”
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Stochastic dynamics simulations in a new generalized ensemble by Hansmann, Ulrich H.E., Eisenmenger, Frank, Okamoto, Yuko

“…We develop a formulation for molecular dynamics, Langevin, and hybrid Monte Carlo algorithms in the recently proposed generalized ensemble that is based on a…”
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A fast unbiased comparison of protein structures by means of the Neddleman-Wunsch algorithm by ROSE, J, EISENMENGER, F

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'String Test' for Hypermucoviscous Klebsiella pneumoniae by Eisenmenger, Elizabeth F, Guajardo, Emmanuel, Finch, Natalie, Atmar, Robert L, Sargsyan, Zaven

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Tissue-type plasminogen activator mutants imitating urokinase in the peptide link between kringle and protease domains and at selected sites within the protease domain by Hinzmann, B, Wernicke, D, Pfeifer, M, Zacharias, U, Fischer, B, Eisenmenger, F, Will, H

“…Tissue-type plasminogen activator (tPA) mutants which, at selected amino acid positions, mimic urokinase-type plasminogen activator (uPA) were expressed in…”
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Tissue-type plasminogen activator mutants imitating urokinase in the peptide link between kringle and protease domains and at selected sites within the protease doamin by HINZMANN, B, WERNICKE, D, PFEIFER, M, ZACHARIAS, U, FISCHER, B, EISENMENGER, F, WILL, H

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