Search Results - "Eisen, J. A."

Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis by Paulsen, I. T., Banerjei, L., Myers, G. S. A., Nelson, K. E., Seshadri, R., Read, T. D., Fouts, D. E., Eisen, J. A., Gill, S. R., Heidelberg, J. F., Tettelin, H., Dodson, R. J., Umayam, L., Brinkac, L., Beanan, M., Daugherty, S., DeBoy, R. T., Durkin, S., Kolonay, J., Madupu, R., Nelson, W., Vamathevan, J., Tran, B., Upton, J., Hansen, T., Shetty, J., Khouri, H., Utterback, T., Radune, D., Ketchum, K. A., Dougherty, B. A., Fraser, C. M.

“…The complete genome sequence of Enterococcus faecalis V583, a vancomycin-resistant clinical isolate, revealed that more than a quarter of the genome consists…”
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Evolution of Sensory Complexity Recorded in a Myxobacterial Genome by Goldman, B. S., Nierman, W. C., Kaiser, D., Slater, S. C., Durkin, A. S., Eisen, J. A., Ronning, C. M., Barbazuk, W. B., Blanchard, M., Field, C., Halling, C., Hinkle, G., Iartchuk, O., Kim, H. S., Mackenzie, C., Madupu, R., Miller, N., Shvartsbeyn, A., Sullivan, S. A., Vaudin, M., Wiegand, R., Kaplan, H. B., Eisen, J.

“…Myxobacteria are single-celled, but social, eubacterial predators. Upon starvation they build multicellular fruiting bodies using a developmental program that…”
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Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains by Fleischmann, R D, Alland, D, Eisen, J A, Carpenter, L, White, O, Peterson, J, DeBoy, R, Dodson, R, Gwinn, M, Haft, D, Hickey, E, Kolonay, J F, Nelson, W C, Umayam, L A, Ermolaeva, M, Salzberg, S L, Delcher, A, Utterback, T, Weidman, J, Khouri, H, Gill, J, Mikula, A, Bishai, W, Jacobs, Jr, W R, Venter, J C, Fraser, C M

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Calyptogena magnifica Chemoautotrophic Symbiont Genome by Newton, I.L.G, Woyke, T, Auchtung, T.A, Dilly, G.F, Dutton, R.J, Fisher, M.C, Fontanez, K.M, Lau, E, Stewart, F.J, Richardson, P.M, Barry, K.W, Saunders, E, Detter, J.C, Wu, D, Eisen, J.A, Cavanaugh, C.M

“…Chemoautotrophic endosymbionts are the metabolic cornerstone of hydrothermal vent communities, providing invertebrate hosts with nearly all of their nutrition…”
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Microbial Genes in the Human Genome: Lateral Transfer or Gene Loss? by Salzberg, Steven L., White, Owen, Peterson, Jeremy, Eisen, Jonathan A.

“…The human genome was analyzed for evidence that genes had been laterally transferred into the genome from prokaryotic organisms. Protein sequence comparisons…”
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TIGRFAMs: a protein family resource for the functional identification of proteins by Haft, D H, Loftus, B J, Richardson, D L, Yang, F, Eisen, J A, Paulsen, I T, White, O

“…TIGRFAMs is a collection of protein families featuring curated multiple sequence alignments, hidden Markov models and associated information designed to…”
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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing by Shih, Patrick M., Wu, Dongying, Latifi, Amel, Axen, Seth D., Fewer, David P., Talla, Emmanuel, Calteau, Alexandra, Cai, Fei, de Marsac, Nicole Tandeau, Rippka, Rosmarie, Herdman, Michael, Sivonen, Kaarina, Coursin, Therese, Laurent, Thierry, Goodwin, Lynne, Nolan, Matt, Davenport, Karen W., Han, Cliff S., Rubin, Edward M., Eisen, Jonathan A., Woyke, Tanja, Gugger, Muriel, Kerfeld, Cheryl A.

“…The cyanobacterial phylum encompasses oxygenic photosynthetic prokaryotes of a great breadth of morphologies and ecologies; they play key roles in global…”
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Microbial genome sequencing by Fraser, Claire M, Eisen, Jonathan A, Salzberg, Steven L

“…Complete genome sequences of 30 microbial species have been determined during the past five years, and work in progress indicates that the complete sequences…”
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Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis by Eisen, J A

“…The ability to accurately predict gene function based on gene sequence is an important tool in many areas of biological research. Such predictions have become…”
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Horizontal gene transfer among microbial genomes: new insights from complete genome analysis by Eisen, Jonathan A

“…The determination and analysis of complete genome sequences has led to the suggestion that horiztonal gene transfer may be much more extensive than previously…”
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Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments by Methé, B. A., Nelson, K. E., Eisen, J. A., Paulsen, I. T., Nelson, W., Heidelberg, J. F., Wu, D., Wu, M., Ward, N., Beanan, M. J., Dodson, R. J., Madupu, R., Brinkac, L. M., Daugherty, S. C., DeBoy, R. T., Durkin, A. S., Gwinn, M., Kolonay, J. F., Sullivan, S. A., Haft, D. H., Selengut, J., Davidsen, T. M., Zafar, N., White, O., Tran, B., Romero, C., H. A Forberger, Weidman, J., Khouri, H., Feldblyum, T. V., Utterback, T. R., Van Aken, S. E., Lovley, D. R., Fraser, C. M.

“…The complete genome sequence of Geobacter sulfurreducens, a δ-proteobacterium, reveals unsuspected capabilities, including evidence of aerobic metabolism,…”
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Genome of Thermotoga maritima MSB8 by Nelson, K E, Eisen, J A, Fraser, C M

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Sequence and drug susceptibility of subtype C reverse transcriptase from human immunodeficiency virus type 1 seroconverters in Zimbabwe by Shafer, R W, Eisen, J A, Merigan, T C, Katzenstein, D A

“…Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Gastrogenomic delights: A movable feast by Eisen, Jonathan A, Kaiser, Dale, Myers, Richard M

“…The complete genome sequences of Escherichia coli and Helicobacter pylori provide insights into the biology of these species…”
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Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58 by Tettelin, Hervé, Saunders, Nigel J., Heidelberg, John, Jeffries, Alex C., Nelson, Karen E., Eisen, Jonathan A., Ketchum, Karen A., Hood, Derek W., Peden, John F., Dodson, Robert J., Nelson, William C., Gwinn, Michelle L., DeBoy, Robert, Peterson, Jeremy D., Hickey, Erin K., Haft, Daniel H., Salzberg, Steven L., White, Owen, Fleischmann, Robert D., Dougherty, Brian A., Mason, Tanya, Ciecko, Anne, Parksey, Debbie S., Blair, Eric, Cittone, Henry, Clark, Emily B., Cotton, Matthew D., Utterback, Terry R., Khouri, Hoda, Qin, Haiying, Vamathevan, Jessica, Gill, John, Scarlato, Vincenzo, Masignani, Vega, Pizza, Mariagrazia, Grandi, Guido, Sun, Li, Smith, Hamilton O., Fraser, Claire M., Moxon, E. Richard, Rappuoli, Rino, Venter, J. Craig

“…The 2,272,351-base pair genome of Neisseria meningitidis strain MC58 (serogroup B), a causative agent of meningitis and septicemia, contains 2158 predicted…”
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In silico-initiated cloning and molecular characterization of a novel human member of the L1 gene family of neural cell adhesion molecules by WEI, M.-H, KARAVANOVA, I, IVANOV, S. V, POPESCU, N. C, KECK, C. L, PACK, S, EISEN, J. A, LERMAN, M. I

“…To discover genes contributing to mental retardation in 3p- syndrome patients we have used in silico searches for neural genes in NCBI databases (dbEST and…”
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A phylogenomic study of the MutS family of proteins by Eisen, J A

“…The MutS protein of Escherichia coli plays a key role in the recognition and repair of errors made during the replication of DNA. Homologs of MutS have been…”
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Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima by Fraser, Claire M, Nelson, Karen E, Clayton, Rebecca A, Gill, Steven R, Gwinn, Michelle L, Dodson, Robert J, Haft, Daniel H, Hickey, Erin K, Peterson, Jeremy D, Nelson, William C, Ketchum, Karen A, McDonald, Lisa, Utterback, Teresa R, Malek, Joel A, Linher, Katja D, Garrett, Mina M, Stewart, Ashley M, Cotton, Matthew D, Pratt, Matthew S, Phillips, Cheryl A, Richardson, Delwood, Heidelberg, John, Sutton, Granger G, Fleischmann, Robert D, Eisen, Jonathan A, White, Owen, Salzberg, Steven L, Smith, Hamilton O, Venter, J. Craig

“…The 1,860,725-base-pair genome of Thermotoga maritima MSB8 contains 1,877 predicted coding regions, 1,014 (54%) of which have functional assignments and 863…”
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Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1 by White, Owen, Eisen, Jonathan A., Heidelberg, John F., Hickey, Erin K., Peterson, Jeremy D., Dodson, Robert J., Haft, Daniel H., Gwinn, Michelle L., Nelson, William C., Richardson, Delwood L., Moffat, Kelly S., Qin, Haiying, Jiang, Lingxia, Pamphile, Wanda, Crosby, Marie, Shen, Mian, Vamathevan, Jessica J., Lam, Peter, McDonald, Lisa, Utterback, Terry, Zalewski, Celeste, Makarova, Kira S., Aravind, L., Daly, Michael J., Minton, Kenneth W., Fleischmann, Robert D., Ketchum, Karen A., Nelson, Karen E., Salzberg, Steven, Smith, Hamilton O., Venter, J. Craig, Fraser, Claire M.

“…The complete genome sequence of the radiation-resistant bacterium Deinococcus radiodurans R1 is composed of two chromosomes (2,648,638 and 412,348 base pairs),…”
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Lateral Gene Transfer or Viral Colonization? by Defilippis, Victor, Villarreal, Luis P., Salzberg, Steven L., Eisen, Jonathan A.

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