Search Results - "Egorov, Artyom A."

Structure-functional characterization of Lactococcus AbiA phage defense system by Gapińska, Marta, Zajko, Weronika, Skowronek, Krzysztof, Figiel, Małgorzata, Krawczyk, Paweł S, Egorov, Artyom A, Dziembowski, Andrzej, Johansson, Marcus J O, Nowotny, Marcin

“…Bacterial reverse transcriptases (RTs) are a large and diverse enzyme family. AbiA, AbiK and Abi-P2 are abortive infection system (Abi) RTs that mediate…”
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Genome-encoded ABCF factors implicated in intrinsic antibiotic resistance in Gram-positive bacteria: VmlR2, Ard1 and CplR by Obana, Nozomu, Takada, Hiraku, Crowe-McAuliffe, Caillan, Iwamoto, Mizuki, Egorov, Artyom A, Wu, Kelvin J Y, Chiba, Shinobu, Murina, Victoriia, Paternoga, Helge, Tresco, Ben I C, Nomura, Nobuhiko, Myers, Andrew G, Atkinson, Gemma C, Wilson, Daniel N, Hauryliuk, Vasili

“…Abstract Genome-encoded antibiotic resistance (ARE) ATP-binding cassette (ABC) proteins of the F subfamily (ARE-ABCFs) mediate intrinsic resistance in diverse…”
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svist4get: a simple visualization tool for genomic tracks from sequencing experiments by Egorov, Artyom A, Sakharova, Ekaterina A, Anisimova, Aleksandra S, Dmitriev, Sergey E, Gladyshev, Vadim N, Kulakovskiy, Ivan V

“…High-throughput sequencing often provides a foundation for experimental analyses in the life sciences. For many such methods, an intermediate layer of…”
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The ABCF ATPase New1 resolves translation termination defects associated with specific tRNAArg and tRNALys isoacceptors in the P site by Turnbull, Kathryn, Paternoga, Helge, von der Weth, Esther, Egorov, Artyom A, Pochopien, Agnieszka A, Zhang, Yujie, Nersisyan, Lilit, Margus, Tõnu, Johansson, Marcus J O, Pelechano, Vicent, Wilson, Daniel N, Hauryliuk, Vasili

“…The efficiency of translation termination is determined by the nature of the stop codon as well as its context. In eukaryotes, recognition of the A-site stop…”
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Human Tissues Exhibit Diverse Composition of Translation Machinery by Anisimova, Aleksandra S, Kolyupanova, Natalia M, Makarova, Nadezhda E, Egorov, Artyom A, Kulakovskiy, Ivan V, Dmitriev, Sergey E

“…While protein synthesis is vital for the majority of cell types of the human body, diversely differentiated cells require specific translation regulation. This…”
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uORF4u: a tool for annotation of conserved upstream open reading frames by Egorov, Artyom A, Atkinson, Gemma C

“…Abstract Summary Upstream open reading frames (uORFs, often encoding so-called leader peptides) can regulate translation and transcription of downstream main…”
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Ribo-Seq and RNA-Seq of TMA46 ( DFRP1) and GIR2 ( DFRP2) knockout yeast strains [version 1; peer review: 3 approved] by Egorov, Artyom A, Makeeva, Desislava S, Makarova, Nadezhda E, Bykov, Dmitri A, Hrytseniuk, Yanislav S, Mitkevich, Olga V, Urakov, Valery N, Alexandrov, Alexander I, Kulakovskiy, Ivan V, Dmitriev, Sergey E

“…In eukaryotes, stalled and collided ribosomes are recognized by several conserved multicomponent systems, which either block protein synthesis in situ and…”
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Translatome and transcriptome analysis of TMA20 (MCT-1) and TMA64 (eIF2D) knockout yeast strains by Makeeva, Desislava S., Lando, Andrey S., Anisimova, Aleksandra, Egorov, Artyom A., Logacheva, Maria D., Penin, Alexey A., Andreev, Dmitry E., Sinitcyn, Pavel G., Terenin, Ilya M., Shatsky, Ivan N., Kulakovskiy, Ivan V., Dmitriev, Sergey E.

“…TMA20 (MCT-1), TMA22 (DENR) and TMA64 (eIF2D) are eukaryotic translation factors involved in ribosome recycling and re-initiation. They operate with P-site…”
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The structural basis of hyperpromiscuity in a core combinatorial network of type II toxin-antitoxin and related phage defense systems by Ernits, Karin, Saha, Chayan Kumar, Brodiazhenko, Tetiana, Chouhan, Bhanu, Shenoy, Aditi, Buttress, Jessica A, Duque-Pedraza, Julián J, Bojar, Veda, Nakamoto, Jose A, Kurata, Tatsuaki, Egorov, Artyom A, Shyrokova, Lena, Johansson, Marcus J O, Mets, Toomas, Rustamova, Aytan, Džigurski, Jelisaveta, Tenson, Tanel, Garcia-Pino, Abel, Strahl, Henrik, Elofsson, Arne, Hauryliuk, Vasili, Atkinson, Gemma C

“…Toxin-antitoxin (TA) systems are a large group of small genetic modules found in prokaryotes and their mobile genetic elements. Type II TAs are encoded as…”
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Mechanism of phage sensing and restriction by toxin-antitoxin-chaperone systems by Mets, Toomas, Kurata, Tatsuaki, Ernits, Karin, Johansson, Marcus J O, Craig, Sophie Z, Evora, Gabriel Medina, Buttress, Jessica A, Odai, Roni, Wallant, Kyo Coppieters't, Nakamoto, Jose A, Shyrokova, Lena, Egorov, Artyom A, Doering, Christopher Ross, Brodiazhenko, Tetiana, Laub, Michael T, Tenson, Tanel, Strahl, Henrik, Martens, Chloe, Harms, Alexander, Garcia-Pino, Abel, Atkinson, Gemma C, Hauryliuk, Vasili

“…Toxin-antitoxins (TAs) are prokaryotic two-gene systems composed of a toxin neutralized by an antitoxin. Toxin-antitoxin-chaperone (TAC) systems additionally…”
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A standard knockout procedure alters expression of adjacent loci at the translational level by Egorov, Artyom A, Alexandrov, Alexander I, Urakov, Valery N, Makeeva, Desislava S, Edakin, Roman O, Kushchenko, Artem S, Gladyshev, Vadim N, Kulakovskiy, Ivan V, Dmitriev, Sergey E

“…Abstract The Saccharomyces cerevisiae gene deletion collection is widely used for functional gene annotation and genetic interaction analyses. However, the…”
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A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice,Wiki and Databases by Tesson, Florian, Planel, Rémi, Egorov, Artyom A, Georjon, Héloïse, Vaysset, Hugo, Brancotte, Bryan, Néron, Bertrand, Mordret, Ernest, Atkinson, Gemma Catherine, Bernheim, Aude, Cury, Jean

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