Search Results - "Eggermont, Jeroen"

Comparative cellular analysis of motor cortex in human, marmoset and mouse by Bakken, Trygve E., Jorstad, Nikolas L., Hu, Qiwen, Lake, Blue B., Tian, Wei, Kalmbach, Brian E., Crow, Megan, Hodge, Rebecca D., Krienen, Fenna M., Sorensen, Staci A., Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D., Aldridge, Andrew I., Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Crichton, Kirsten, Daigle, Tanya L., Dalley, Rachel, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T., Herb, Brian R., Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Liu, Christine S., Lucero, Jacinta D., Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A., Moussa, Marmar, Nery, Joseph R., Nicovich, Philip R., Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K., Owen, Scott, Palmer, Carter R., Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M., Rimorin, Christine, Rivkin, Angeline, Romanow, William J., Sedeño-Cortés, Adriana E., Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A., Behrens, M. Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R., Höllt, Thomas, Horwitz, Gregory D., Keene, C. Dirk, Kharchenko, Peter V., Lelieveldt, Boudewijn P., Luo, Chongyuan, Mukamel, Eran A., Pinto-Duarte, António, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H., Smith, Kimberly, Spain, William J., White, Owen R., Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z., McCarroll, Steven A., Ting, Jonathan T., Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R., Linnarsson, Sten, Lein, Ed S.

“…The primary motor cortex (M1) is essential for voluntary fine-motor control and is functionally conserved across mammals 1 . Here, using high-throughput…”
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Memory CD4+ T cells are generated in the human fetal intestine by Li, Na, van Unen, Vincent, Abdelaal, Tamim, Guo, Nannan, Kasatskaya, Sofya A., Ladell, Kristin, McLaren, James E., Egorov, Evgeny S., Izraelson, Mark, Chuva de Sousa Lopes, Susana M., Höllt, Thomas, Britanova, Olga V, Eggermont, Jeroen, de Miranda, Noel F. C. C., Chudakov, Dmitriy M., Price, David A., Lelieveldt, Boudewijn P. F., Koning, Frits

“…The fetus is thought to be protected from exposure to foreign antigens, yet CD45RO + T cells reside in the fetal intestine. Here we combined functional assays…”
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Impact of Implantation Technique and Plaque Morphology on Strut Embedment and Scaffold Expansion of Polylactide Bioresorbable Scaffold　– Insights From ABSORB Japan Trial by Sotomi, Yohei, Onuma, Yoshinobu, Dijkstra, Jouke, Eggermont, Jeroen, Liu, Shengnan, Tenekecioglu, Erhan, Zeng, Yaping, Asano, Taku, Winter, Robbert J. de, Popma, Jeffrey J., Kozuma, Ken, Tanabe, Kengo, Serruys, Patrick W., Kimura, Takeshi

“…Background:The optimal implantation technique for the bioresorbable scaffold (Absorb, Abbott Vascular) is still a matter of debate. The purpose of the present…”
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Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain by Zhang, Yun, Miller, Jeremy A., Park, Jeongbin, Lelieveldt, Boudewijn P., Long, Brian, Abdelaal, Tamim, Aevermann, Brian D., Biancalani, Tommaso, Comiter, Charles, Dzyubachyk, Oleh, Eggermont, Jeroen, Langseth, Christoffer Mattsson, Petukhov, Viktor, Scalia, Gabriele, Vaishnav, Eeshit Dhaval, Zhao, Yilin, Lein, Ed S., Scheuermann, Richard H.

“…With the advent of multiplex fluorescence in situ hybridization (FISH) and in situ RNA sequencing technologies, spatial transcriptomics analysis is advancing…”
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Immune subset-committed proliferating cells populate the human foetal intestine throughout the second trimester of gestation by Guo, Nannan, Li, Na, Jia, Li, Jiang, Qinyue, Schreurs, Mette, van Unen, Vincent, de Sousa Lopes, Susana M. Chuva, Vloemans, Alexandra A., Eggermont, Jeroen, Lelieveldt, Boudewijn, Staal, Frank J. T., de Miranda, Noel F. C. C., Pascutti, M. Fernanda, Koning, Frits

“…The intestine represents the largest immune compartment in the human body, yet its development and organisation during human foetal development is largely…”
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Early-Life Compartmentalization of Immune Cells in Human Fetal Tissues Revealed by High-Dimensional Mass Cytometry by Li, Na, van Unen, Vincent, Guo, Nannan, Abdelaal, Tamim, Somarakis, Antonios, Eggermont, Jeroen, Mahfouz, Ahmed, Chuva de Sousa Lopes, Susana M, Lelieveldt, Boudewijn P F, Koning, Frits

“…The human fetal immune system must protect the infant against the sudden exposure to a large variety of pathogens upon birth. While it is known that the fetal…”
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IDO + Endothelial Cells in Glomeruli of Kidney Transplantation Patients With Glomerulitis by Hendriks, Sanne H, Heidt, Sebastiaan, Krop, Juliette, IJsselsteijn, Marieke E, Eggermont, Jeroen, Kers, Jesper, Reinders, Marlies E J, Koning, Frits, van Kooten, Cees

“…Kidney transplantation is the preferred treatment option for patients with end-stage renal disease. However, long-term graft survival remains a challenge. The…”
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Validation of full-field optical coherence tomography in distinguishing malignant and benign tissue in resected pancreatic cancer specimens by van Manen, Labrinus, Stegehuis, Paulien L, Fariña-Sarasqueta, Arantza, de Haan, Lorraine M, Eggermont, Jeroen, Bonsing, Bert A, Morreau, Hans, Lelieveldt, Boudewijn P F, van de Velde, Cornelis J H, Vahrmeijer, Alexander L, Dijkstra, Jouke, Mieog, J Sven D

“…Pancreatic cancer is the fourth leading cause of cancer-related mortality in the United States. The minority of patients can undergo curative-intended surgical…”
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Noninvasive Detection of Metastases and Follicle Density in Ovarian Tissue Using Full-Field Optical Coherence Tomography by Peters, Inge T A, Stegehuis, Paulien L, Peek, Ronald, Boer, Florine L, van Zwet, Erik W, Eggermont, Jeroen, Westphal, Johan R, Kuppen, Peter J K, Trimbos, J Baptist, Hilders, Carina G J M, Lelieveldt, Boudewijn P F, van de Velde, Cornelis J H, Bosse, Tjalling, Dijkstra, Jouke, Vahrmeijer, Alexander L

“…Autotransplantation of ovarian tissue can be used to restore fertility in patients with cancer following gonadotoxic treatment. Whether this procedure is safe…”
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Quantitative assessment of the stent/scaffold strut embedment analysis by optical coherence tomography by Sotomi, Yohei, Tateishi, Hiroki, Suwannasom, Pannipa, Dijkstra, Jouke, Eggermont, Jeroen, Liu, Shengnan, Tenekecioglu, Erhan, Zheng, Yaping, Abdelghani, Mohammad, Cavalcante, Rafael, de Winter, Robbert J., Wykrzykowska, Joanna J., Onuma, Yoshinobu, Serruys, Patrick W., Kimura, Takeshi

“…The degree of stent/scaffold embedment could be a surrogate parameter of the vessel wall-stent/scaffold interaction and could have biological implications in…”
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Mixed integer evolution strategies for parameter optimization by Li, Rui, Emmerich, Michael T M, Eggermont, Jeroen, Bäck, Thomas, Schütz, M, Dijkstra, J, Reiber, J H C

“…Evolution strategies (ESs) are powerful probabilistic search and optimization algorithms gleaned from biological evolution theory. They have been successfully…”
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Automatic detection of bioresorbable vascular scaffold struts in intravascular optical coherence tomography pullback runs by Wang, Ancong, Nakatani, Shimpei, Eggermont, Jeroen, Onuma, Yoshi, Garcia-Garcia, Hector M, Serruys, Patrick W, Reiber, Johan H C, Dijkstra, Jouke

“…Bioresorbable vascular scaffolds (BVS) have gained significant interest in both the technical and clinical communities as a possible alternative to metallic…”
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Bioresorption and Vessel Wall Integration of a Fully Bioresorbable Polymeric Everolimus-Eluting Scaffold by Nakatani, Shimpei, MD, Ishibashi, Yuki, MD, PhD, Sotomi, Yohei, MD, Perkins, Laura, DVM, PhD, Eggermont, Jeroen, PhD, Grundeken, Maik J., MD, Dijkstra, Jouke, PhD, Rapoza, Richard, PhD, Virmani, Renu, MD, Serruys, Patrick W., MD, PhD, Onuma, Yoshinobu, MD, PhD

“…Abstract Objectives The aim of the present study was to investigate the relationship between the integration process and luminal enlargement with the support…”
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Temporal Evolution of Strut Light Intensity After Implantation of Bioresorbable Polymeric Intracoronary Scaffolds in the ABSORB Cohort B Trial: An Application of a New Quantitative Method Based on Optical Coherence Tomography by Nakatani, Shimpei, Onuma, Yoshinobu, Ishibashi, Yuki, Eggermont, Jeroen, Zhang, Yao-Jun, Campos, Carlos M., Cho, Yun Kyeong, Liu, Shengnan, Dijkstra, Jouke, Reiber, Johan H.C., Perkins, Laura, Sheehy, Alexander, Veldhof, Susan, Rapoza, Richard, Es, Gerrit-Anne van, Garcia-Garcia, Hector M., Geuns, Robert-Jan van, Serruys, Patrick W., on behalf of the ABSORB Cohort B investigators

“…Background:Quantitative light intensity analysis of the strut core by optical coherence tomography (OCT) may enable assessment of changes in the light…”
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Conserved cell types with divergent features in human versus mouse cortex by Hodge, Rebecca D., Bakken, Trygve E., Miller, Jeremy A., Smith, Kimberly A., Barkan, Eliza R., Graybuck, Lucas T., Close, Jennie L., Long, Brian, Johansen, Nelson, Penn, Osnat, Yao, Zizhen, Eggermont, Jeroen, Höllt, Thomas, Levi, Boaz P., Shehata, Soraya I., Aevermann, Brian, Beller, Allison, Bertagnolli, Darren, Brouner, Krissy, Casper, Tamara, Cobbs, Charles, Dalley, Rachel, Dee, Nick, Ding, Song-Lin, Ellenbogen, Richard G., Fong, Olivia, Garren, Emma, Goldy, Jeff, Gwinn, Ryder P., Hirschstein, Daniel, Keene, C. Dirk, Keshk, Mohamed, Ko, Andrew L., Lathia, Kanan, Mahfouz, Ahmed, Maltzer, Zoe, McGraw, Medea, Nguyen, Thuc Nghi, Nyhus, Julie, Ojemann, Jeffrey G., Oldre, Aaron, Parry, Sheana, Reynolds, Shannon, Rimorin, Christine, Shapovalova, Nadiya V., Somasundaram, Saroja, Szafer, Aaron, Thomsen, Elliot R., Tieu, Michael, Quon, Gerald, Scheuermann, Richard H., Yuste, Rafael, Sunkin, Susan M., Lelieveldt, Boudewijn, Feng, David, Ng, Lydia, Bernard, Amy, Hawrylycz, Michael, Phillips, John W., Tasic, Bosiljka, Zeng, Hongkui, Jones, Allan R., Koch, Christof, Lein, Ed S.

“…Elucidating the cellular architecture of the human cerebral cortex is central to understanding our cognitive abilities and susceptibility to disease. Here we…”
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ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data by Vieth, Alexander, Kroes, Thomas, Thijssen, Julian, van Lew, Baldur, Eggermont, Jeroen, Basu, Soumyadeep, Eisemann, Elmar, Vilanova, Anna, Hollt, Thomas, Lelieveldt, Boudewijn

“…Exploration and analysis of high-dimensional data are important tasks in many fields that produce large and complex data, like the financial sector, systems…”
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Comparative transcriptomics reveals human-specific cortical features by Jorstad, Nikolas L, Song, Janet H T, Exposito-Alonso, David, Suresh, Hamsini, Castro-Pacheco, Nathan, Krienen, Fenna M, Yanny, Anna Marie, Close, Jennie, Gelfand, Emily, Long, Brian, Seeman, Stephanie C, Travaglini, Kyle J, Basu, Soumyadeep, Beaudin, Marc, Bertagnolli, Darren, Crow, Megan, Ding, Song-Lin, Eggermont, Jeroen, Glandon, Alexandra, Goldy, Jeff, Kiick, Katelyn, Kroes, Thomas, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Siletti, Kimberly, Somasundaram, Saroja, Tieu, Michael, Torkelson, Amy, Feng, Guoping, Hopkins, William D, Höllt, Thomas, Keene, C Dirk, Linnarsson, Sten, McCarroll, Steven A, Lelieveldt, Boudewijn P, Sherwood, Chet C, Smith, Kimberly, Walsh, Christopher A, Dobin, Alexander, Gillis, Jesse, Lein, Ed S, Hodge, Rebecca D, Bakken, Trygve E

“…The cognitive abilities of humans are distinctive among primates, but their molecular and cellular substrates are poorly understood. We used comparative…”
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Tissue characterization with depth-resolved attenuation coefficient and backscatter term in intravascular optical coherence tomography images by Liu, Shengnan, Sotomi, Yohei, Eggermont, Jeroen, Nakazawa, Gaku, Torii, Sho, Ijichi, Takeshi, Onuma, Yoshinobu, Serruys, Patrick W, Lelieveldt, Boudewijn P. F, Dijkstra, Jouke

“…An important application of intravascular optical coherence tomography (IVOCT) for atherosclerotic tissue analysis is using it to estimate attenuation and…”
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Machine learning for atherosclerotic tissue component classification in combined near-infrared spectroscopy intravascular ultrasound imaging: Validation against histology by Bajaj, Retesh, Eggermont, Jeroen, Grainger, Stephanie J., Räber, Lorenz, Parasa, Ramya, Khan, Ameer Hamid A., Costa, Christos, Erdogan, Emrah, Hendricks, Michael J., Chandrasekharan, Karthik H., Andiapen, Mervyn, Serruys, Patrick W., Torii, Ryo, Mathur, Anthony, Baumbach, Andreas, Dijkstra, Jouke, Bourantas, Christos V.

“…Accurate classification of plaque composition is essential for treatment planning. Intravascular ultrasound (IVUS) has limited efficacy in assessing tissue…”
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Bioresorption and Vessel Wall Integration of a Fully Bioresorbable Polymeric Everolimus-Eluting Scaffold: Optical Coherence Tomography, Intravascular Ultrasound, and Histological Study in a Porcine Model With 4-Year Follow-Up by Nakatani, Shimpei, Ishibashi, Yuki, Sotomi, Yohei, Perkins, Laura, Eggermont, Jeroen, Grundeken, Maik J, Dijkstra, Jouke, Rapoza, Richard, Virmani, Renu, Serruys, Patrick W, Onuma, Yoshinobu

“…The aim of the present study was to investigate the relationship between the integration process and luminal enlargement with the support of light intensity…”
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