Search Results - "Edwards, Nathan"

The CPTAC Data Portal: A Resource for Cancer Proteomics Research by Edwards, Nathan J., Oberti, Mauricio, Thangudu, Ratna R., Cai, Shuang, McGarvey, Peter B., Jacob, Shine, Madhavan, Subha, Ketchum, Karen A.

“…The Clinical Proteomic Tumor Analysis Consortium (CPTAC), under the auspices of the National Cancer Institute’s Office of Cancer Clinical Proteomics Research,…”
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Updates to the Symbol Nomenclature for Glycans guidelines by Neelamegham, Sriram, Aoki-Kinoshita, Kiyoko, Bolton, Evan, Frank, Martin, Lisacek, Frederique, Lütteke, Thomas, O'Boyle, Noel, Packer, Nicolle H, Stanley, Pamela, Toukach, Philip, Varki, Ajit, Woods, Robert J

“…The Symbol Nomenclature for Glycans (SNFG) is a community-curated standard for the depiction of monosaccharides and complex glycans using various…”
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Reducing COVID-19 airborne transmission risks on public transportation buses: an empirical study on aerosol dispersion and control by Edwards, Nathan J., Widrick, Rebecca, Wilmes, Justin, Breisch, Ben, Gerschefske, Mike, Sullivan, Jon, Potember, Richard, Espinoza-Calvio, Angelica

“…This study is one of the first COVID-19 related bus studies to fully characterize cough aerosol dispersion and control in the highly turbulent real-world…”
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Differential Content of Proteins, mRNAs, and miRNAs Suggests that MDSC and Their Exosomes May Mediate Distinct Immune Suppressive Functions by Geis-Asteggiante, Lucía, Belew, Ashton T, Clements, Virginia K, Edwards, Nathan J, Ostrand-Rosenberg, Suzanne, El-Sayed, Najib M, Fenselau, Catherine

“…Myeloid-derived suppressor cells (MDSC) are immature myeloid cells that accumulate in the circulation and the tumor microenvironment of most cancer patients…”
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Protein Identification from Tandem Mass Spectra by Database Searching by Edwards, Nathan J

“…Protein identification from tandem mass spectra is one of the most versatile and widely used proteomics workflows, able to identify proteins, characterize…”
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Exploring Site-Specific N‑Glycosylation Microheterogeneity of Haptoglobin Using Glycopeptide CID Tandem Mass Spectra and Glycan Database Search by Chandler, Kevin Brown, Pompach, Petr, Goldman, Radoslav, Edwards, Nathan

“…Glycosylation is a common protein modification with a significant role in many vital cellular processes and human diseases, making the characterization of…”
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Mechanical and microstructural properties of 2024-T351 aluminium using a hat-shaped specimen at high strain rates by Edwards, Nathan J., Song, Wei, Cimpoeru, Stephen J., Ruan, Dong, Lu, Guoxing, Herzig, Norman

“…This paper investigates adiabatic shear bands (ASBs) in 2024-T351 aluminium and their effect on the mechanical properties and microstructure of this aluminium…”
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Site-specific analysis of changes in the glycosylation of proteins in liver cirrhosis using data-independent workflow with soft fragmentation by Sanda, Miloslav, Zhang, Lihua, Edwards, Nathan J., Goldman, Radoslav

“…Cirrhosis of the liver is associated with increased fucosylation of proteins in the plasma. We describe a data-independent (DIA) strategy for comparative…”
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Site-specific Glycoforms of Haptoglobin in Liver Cirrhosis and Hepatocellular Carcinoma by Pompach, Petr, Brnakova, Zuzana, Sanda, Miloslav, Wu, Jing, Edwards, Nathan, Goldman, Radoslav

“…Haptoglobin is a liver-secreted glycoprotein with four N-glycosylation sites. Its glycosylation was reported to change in several cancer diseases, which…”
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GlyGen: Computational and Informatics Resources for Glycoscience by York, William S, Mazumder, Raja, Ranzinger, Rene, Edwards, Nathan, Kahsay, Robel, Aoki-Kinoshita, Kiyoko F, Campbell, Matthew P, Cummings, Richard D, Feizi, Ten, Martin, Maria, Natale, Darren A, Packer, Nicolle H, Woods, Robert J, Agarwal, Gaurav, Arpinar, Sena, Bhat, Sanath, Blake, Judith, Castro, Leyla Jael Garcia, Fochtman, Brian, Gildersleeve, Jeffrey, Goldman, Radoslav, Holmes, Xavier, Jain, Vinamra, Kulkarni, Sujeet, Mahadik, Rupali, Mehta, Akul, Mousavi, Reza, Nakarakommula, Sandeep, Navelkar, Rahi, Pattabiraman, Nagarajan, Pierce, Michael J, Ross, Karen, Vasudev, Preethi, Vora, Jeet, Williamson, Tatiana, Zhang, Wenjin

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Characterizing Head Acceleration Events in Law Enforcement Cadets During Subject Control Technique Training by Smith, Carly R., Onate, James A., Edwards, Nathan A., Hagen, Joshua A., Kolba, Chris, Paur, Scott, Walters, Joshua, Caccese, Jaclyn B.

“…Law enforcement cadets (LECs) complete weeks of subject control technique training. Similar sport-related combat training has been shown to expose participants…”
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SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data by Prashant, N M, Alomran, Nawaf, Chen, Yu, Liu, Hongyu, Bousounis, Pavlos, Movassagh, Mercedeh, Edwards, Nathan, Horvath, Anelia

“…Recent studies have demonstrated the utility of scRNA-seq SNVs to distinguish tumor from normal cells, characterize intra-tumoral heterogeneity, and define…”
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Use of accelerometers and inertial measurement units to quantify movement of tactical athletes: A systematic review by Edwards, Nathan A., Talarico, Maria K., Chaudhari, Ajit, Mansfield, Cody J., Oñate, James

“…The dynamic work environments of tactical athletes are difficult to replicate in a laboratory. Accelerometers and inertial measurement units provide a way to…”
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A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline by Rudnick, Paul A, Markey, Sanford P, Roth, Jeri, Mirokhin, Yuri, Yan, Xinjian, Tchekhovskoi, Dmitrii V, Edwards, Nathan J, Thangudu, Ratna R, Ketchum, Karen A, Kinsinger, Christopher R, Mesri, Mehdi, Rodriguez, Henry, Stein, Stephen E

“…The Clinical Proteomic Tumor Analysis Consortium (CPTAC) has produced large proteomics data sets from the mass spectrometric interrogation of tumor samples…”
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Ballistic Impact of Flat-Ended Projectiles against 2024-T351 Plate: Experiments and Modeling by Edwards, Nathan J, Cimpoeru, Stephen J, Herzig, Norman, Ruan, Dong

“…AbstractFlat-ended projectiles were used to impact three distinct thicknesses of 2024-T351 plate. Ballistic limit velocities were determined, and optical…”
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Ubiquitinated Proteins in Exosomes Secreted by Myeloid-Derived Suppressor Cells by Burke, Meghan C, Oei, Maria S, Edwards, Nathan J, Ostrand-Rosenberg, Suzanne, Fenselau, Catherine

“…We provide evidence at the molecular level that ubiquitinated proteins are present in exosomes shed by myeloid-derived suppressor cells (MDSC). Ubiquitin was…”
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Evaluation of Spectral Counting for Relative Quantitation of Proteoforms in Top-Down Proteomics by Geis-Asteggiante, Lucía, Ostrand-Rosenberg, Suzanne, Fenselau, Catherine, Edwards, Nathan J

“…Spectral counting is a straightforward label-free quantitation strategy used in bottom-up proteomics workflows. The application of spectral counting in…”
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Semi-Automated Identification of N-Glycopeptides by Hydrophilic Interaction Chromatography, nano-Reverse-Phase LC–MS/MS, and Glycan Database Search by Pompach, Petr, Chandler, Kevin B, Lan, Renny, Edwards, Nathan, Goldman, Radoslav

“…Glycoproteins fulfill many indispensable biological functions, and changes in protein glycosylation have been observed in various diseases. Improved analytical…”
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Deep-Learning-Derived Evaluation Metrics Enable Effective Benchmarking of Computational Tools for Phosphopeptide Identification by Jiang, Wen, Wen, Bo, Li, Kai, Zeng, Wen-Feng, da Veiga Leprevost, Felipe, Moon, Jamie, Petyuk, Vladislav A., Edwards, Nathan J., Liu, Tao, Nesvizhskii, Alexey I., Zhang, Bing

“…Tandem mass spectrometry (MS/MS)-based phosphoproteomics is a powerful technology for global phosphorylation analysis. However, applying four computational…”
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Phyloproteomic classification of unsequenced organisms by top-down identification of bacterial proteins using capLC-MS/MS on an Orbitrap by Wynne, Colin, Edwards, Nathan J, Fenselau, Catherine

“…Currently, most MS-based proteomic studies of bacteria and archea match experimental data to known amino acid sequences from the target organism. Top-down…”
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