Search Results - "ENGEL, Stacia R"

An Introduction to the Saccharomyces Genome Database (SGD) by Lang, Olivia W, Nash, Robert S, Hellerstedt, Sage T, Engel, Stacia R

“…The Saccharomyces Genome Database (SGD) is a well-established, key resource for researchers studying Saccharomyces cerevisiae. In addition to updating and…”
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Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns by Wood, Valerie, Carbon, Seth, Harris, Midori A, Lock, Antonia, Engel, Stacia R, Hill, David P, Van Auken, Kimberly, Attrill, Helen, Feuermann, Marc, Gaudet, Pascale, Lovering, Ruth C, Poux, Sylvain, Rutherford, Kim M, Mungall, Christopher J

“…Biological processes are accomplished by the coordinated action of gene products. Gene products often participate in multiple processes, and can therefore be…”
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Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources by Wong, Edith D, Miyasato, Stuart R, Aleksander, Suzi, Karra, Kalpana, Nash, Robert S, Skrzypek, Marek S, Weng, Shuai, Engel, Stacia R, Cherry, J Michael

“…Abstract As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since…”
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New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources by Engel, Stacia R, Wong, Edith D, Nash, Robert S, Aleksander, Suzi, Alexander, Micheal, Douglass, Eric, Karra, Kalpana, Miyasato, Stuart R, Simison, Matt, Skrzypek, Marek S, Weng, Shuai, Cherry, J Michael

“…Abstract Saccharomyces cerevisiae is used to provide fundamental understanding of eukaryotic genetics, gene product function, and cellular biological…”
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Saccharomyces Genome Database: the genomics resource of budding yeast by Cherry, J. Michael, Hong, Eurie L., Amundsen, Craig, Balakrishnan, Rama, Binkley, Gail, Chan, Esther T., Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Karra, Kalpana, Krieger, Cynthia J., Miyasato, Stuart R., Nash, Rob S., Park, Julie, Skrzypek, Marek S., Simison, Matt, Weng, Shuai, Wong, Edith D.

“…The Saccharomyces Genome Database (SGD, http://www.yeastgenome.org) is the community resource for the budding yeast Saccharomyces cerevisiae. The SGD project…”
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The reference genome sequence of Saccharomyces cerevisiae: then and now by Engel, Stacia R, Dietrich, Fred S, Fisk, Dianna G, Binkley, Gail, Balakrishnan, Rama, Costanzo, Maria C, Dwight, Selina S, Hitz, Benjamin C, Karra, Kalpana, Nash, Robert S, Weng, Shuai, Wong, Edith D, Lloyd, Paul, Skrzypek, Marek S, Miyasato, Stuart R, Simison, Matt, Cherry, J Michael

“…The genome of the budding yeast Saccharomyces cerevisiae was the first completely sequenced from a eukaryote. It was released in 1996 as the work of a…”
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Transcriptome visualization and data availability at the Saccharomyces Genome Database by Ng, Patrick C, Wong, Edith D, MacPherson, Kevin A, Aleksander, Suzi, Argasinska, Joanna, Dunn, Barbara, Nash, Robert S, Skrzypek, Marek S, Gondwe, Felix, Jha, Sagar, Karra, Kalpana, Weng, Shuai, Miyasato, Stuart, Simison, Matt, Engel, Stacia R, Cherry, J Michael

“…Abstract The Saccharomyces Genome Database (SGD; www.yeastgenome.org) maintains the official annotation of all genes in the Saccharomyces cerevisiae reference…”
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Saccharomyces genome database informs human biology by Skrzypek, Marek S, Nash, Robert S, Wong, Edith D, MacPherson, Kevin A, Hellerstedt, Sage T, Engel, Stacia R, Karra, Kalpana, Weng, Shuai, Sheppard, Travis K, Binkley, Gail, Simison, Matt, Miyasato, Stuart R, Cherry, J Michael

“…Abstract The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is an expertly curated database of literature-derived functional information for…”
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Saccharomyces genome database provides new regulation data by Costanzo, Maria C, Engel, Stacia R, Wong, Edith D, Lloyd, Paul, Karra, Kalpana, Chan, Esther T, Weng, Shuai, Paskov, Kelley M, Roe, Greg R, Binkley, Gail, Hitz, Benjamin C, Cherry, J Michael

“…The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is the community resource for genomic, gene and protein information about the budding yeast…”
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Automated generation of gene summaries at the Alliance of Genome Resources by Kishore, Ranjana, Arnaboldi, Valerio, Van Slyke, Ceri E, Chan, Juancarlos, Nash, Robert S, Urbano, Jose M, Dolan, Mary E, Engel, Stacia R, Shimoyama, Mary, Sternberg, Paul W, Genome Resources, the Alliance of

“…Abstract Short paragraphs that describe gene function, referred to as gene summaries, are valued by users of biological knowledgebases for the ease with which…”
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The Saccharomyces Genome Database Variant Viewer by Sheppard, Travis K, Hitz, Benjamin C, Engel, Stacia R, Song, Giltae, Balakrishnan, Rama, Binkley, Gail, Costanzo, Maria C, Dalusag, Kyla S, Demeter, Janos, Hellerstedt, Sage T, Karra, Kalpana, Nash, Robert S, Paskov, Kelley M, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Cherry, J Michael

“…The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is the authoritative community resource for the Saccharomyces cerevisiae reference genome…”
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Gene Ontology annotations at SGD: new data sources and annotation methods by Hong, Eurie L, Balakrishnan, Rama, Dong, Qing, Christie, Karen R, Park, Julie, Binkley, Gail, Costanzo, Maria C, Dwight, Selina S, Engel, Stacia R, Fisk, Dianna G, Hirschman, Jodi E, Hitz, Benjamin C, Krieger, Cynthia J, Livstone, Michael S, Miyasato, Stuart R, Nash, Robert S, Oughtred, Rose, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Zhu, Kathy K, Dolinski, Kara, Botstein, David, Cherry, J. Michael

“…The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) collects and organizes biological information about the chromosomal features and gene…”
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The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database by Engel, Stacia R, Cherry, J Michael

“…The first completed eukaryotic genome sequence was that of the yeast Saccharomyces cerevisiae, and the Saccharomyces Genome Database (SGD;…”
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Incorporation of a unified protein abundance dataset into the Saccharomyces genome database by Nash, Robert S, Weng, Shuai, Karra, Kalpana, Wong, Edith D, Engel, Stacia R, Cherry, J Michael

“…Abstract The identification and accurate quantitation of protein abundance has been a major objective of proteomics research. Abundance studies have the…”
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Annotation of gene product function from high-throughput studies using the Gene Ontology by Attrill, Helen, Gaudet, Pascale, Huntley, Rachael P, Lovering, Ruth C, Engel, Stacia R, Poux, Sylvain, Van Auken, Kimberly M, Georghiou, George, Chibucos, Marcus C, Berardini, Tanya Z, Wood, Valerie, Drabkin, Harold, Fey, Petra, Garmiri, Penelope, Harris, Midori A, Sawford, Tony, Reiser, Leonore, Tauber, Rebecca, Toro, Sabrina

“…Abstract High-throughput studies constitute an essential and valued source of information for researchers. However, high-throughput experimental workflows are…”
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Model organism data evolving in support of translational medicine by Howe, Douglas G., Blake, Judith A., Bradford, Yvonne M., Bult, Carol J., Calvi, Brian R., Engel, Stacia R., Kadin, James A., Kaufman, Thomas C., Kishore, Ranjana, Laulederkind, Stanley J. F., Lewis, Suzanna E., Moxon, Sierra A. T., Richardson, Joel E., Smith, Cynthia

“…Model organism databases (MODs) have been collecting and integrating biomedical research data for 30 years and were designed to meet specific needs of each…”
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Saccharomyces Genome Database provides mutant phenotype data by Engel, Stacia R, Balakrishnan, Rama, Binkley, Gail, Christie, Karen R, Costanzo, Maria C, Dwight, Selina S, Fisk, Dianna G, Hirschman, Jodi E, Hitz, Benjamin C, Hong, Eurie L, Krieger, Cynthia J, Livstone, Michael S, Miyasato, Stuart R, Nash, Robert, Oughtred, Rose, Park, Julie, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Dolinski, Kara, Botstein, David, Cherry, J. Michael

“…The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is a scientific database for the molecular biology and genetics of the yeast Saccharomyces…”
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Curated protein information in the Saccharomyces genome database by Hellerstedt, Sage T., Nash, Robert S., Weng, Shuai, Paskov, Kelley M., Wong, Edith D., Karra, Kalpana, Engel, Stacia R., Cherry, J. Michael

“…Abstract Due to recent advancements in the production of experimental proteomic data, the Saccharomyces genome database (SGD; www.yeastgenome.org) has been…”
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From one to many: expanding the Saccharomyces cerevisiae reference genome panel by Engel, Stacia R, Weng, Shuai, Binkley, Gail, Paskov, Kelley, Song, Giltae, Cherry, J Michael

“…In recent years, thousands of Saccharomyces cerevisiae genomes have been sequenced to varying degrees of completion. The Saccharomyces Genome Database (SGD)…”
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Integration of macromolecular complex data into the Saccharomyces Genome Database by Wong, Edith D, Skrzypek, Marek S, Weng, Shuai, Binkley, Gail, Meldal, Birgit H M, Perfetto, Livia, Orchard, Sandra E, Engel, Stacia R, Cherry, J Michael

“…Abstract Proteins seldom function individually. Instead, they interact with other proteins or nucleic acids to form stable macromolecular complexes that play…”
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