Search Results - "ENDO, Hisashi"

KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold by Aramaki, Takuya, Blanc-Mathieu, Romain, Endo, Hisashi, Ohkubo, Koichi, Kanehisa, Minoru, Goto, Susumu, Ogata, Hiroyuki

“…Abstract Summary KofamKOALA is a web server to assign KEGG Orthologs (KOs) to protein sequences by homology search against a database of profile hidden Markov…”
Get full text

Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean by Endo, Hisashi, Ogata, Hiroyuki, Suzuki, Koji

“…Diatoms and haptophytes are two major phytoplankton groups, playing pivotal roles in global biogeochemical cycles and marine ecosystems. In general, diatoms…”
Get full text

Increased temperature benefits growth and photosynthetic performance of the sea ice diatom Nitzschia cf. neglecta (Bacillariophyceae) isolated from saroma lagoon, Hokkaido, Japan by Yan, Dong, Endo, Hisashi, Suzuki, Koji, Kroth, P.

“…During ice melt in spring, ice algae are released from the ice and could be exposed to variable temperatures and irradiances in surface water. Saroma Lagoon is…”
Get full text

The complete genomic sequence of the novel myovirus RP13 infecting Ralstonia solanacearum, the causative agent of bacterial wilt by Kawasaki, Takeru, Endo, Hisashi, Ogata, Hiroyuki, Chatchawankanphanich, Orawan, Yamada, Takashi

“…A novel lytic bacteriophage, Ralstonia phage RP13, was isolated from tomato fields in Pang Nga, Thailand. Electron microscopic observation showed it to have…”
Get full text

Assimilation and oxidation of urea‐derived nitrogen in the summer Arctic Ocean by Shiozaki, Takuhei, Hashihama, Fuminori, Endo, Hisashi, Ijichi, Minoru, Takeda, Noriko, Makabe, Akiko, Fujiwara, Amane, Nishino, Shigeto, Harada, Naomi

“…Urea sinks are mainly associated with assimilation by phytoplankton. However, recent studies have shown that there is a process by which nitrifiers convert…”
Get full text

Hygienic behaviors during the COVID-19 pandemic may decrease immunoglobulin G levels: Implications for Kawasaki disease by Yamaguchi, Hiromi, Hirata, Masaaki, Hatakeyama, Kuniya, Yamane, Ichiro, Endo, Hisashi, Okubo, Hiroe, Nishimura, Yoshimi, Nagao, Yoshiro

“…Background Due to the coronavirus disease 2019 (COVID-19) pandemic, hygienic behaviors became a new norm since January 2020. The hygiene hypothesis predicts…”
Get full text

Response of Spring Diatoms to CO2 Availability in the Western North Pacific as Determined by Next-Generation Sequencing by Endo, Hisashi, Sugie, Koji, Yoshimura, Takeshi, Suzuki, Koji

“…Next-generation sequencing (NGS) technologies have enabled us to determine phytoplankton community compositions at high resolution. However, few studies have…”
Get full text

Physical Forcing Controls the Basin‐Scale Occurrence of Nitrogen‐Fixing Organisms in the North Pacific Ocean by Cheung, Shunyan, Nitanai, Risa, Tsurumoto, Chihiro, Endo, Hisashi, Nakaoka, Shin‐ichiro, Cheah, Wee, Lorda, Jaime Färber, Xia, Xiaomin, Liu, Hongbin, Suzuki, Koji

“…Biological nitrogen fixation is increasingly recognized as an important source of new nitrogen in a warming ocean. However, the basin‐scale spatiotemporal…”
Get full text

Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions by Endo, Hisashi, Blanc-Mathieu, Romain, Li, Yanze, Salazar, Guillem, Henry, Nicolas, Labadie, Karine, de Vargas, Colomban, Sullivan, Matthew B., Bowler, Chris, Wincker, Patrick, Karp-Boss, Lee, Sunagawa, Shinichi, Ogata, Hiroyuki

“…Nucleocytoplasmic large DNA viruses (NCLDVs) are ubiquitous in marine environments and infect diverse eukaryotes. However, little is known about their…”
Get full text

Discovery of Viral Myosin Genes With Complex Evolutionary History Within Plankton by Kijima, Soichiro, Delmont, Tom O, Miyazaki, Urara, Gaia, Morgan, Endo, Hisashi, Ogata, Hiroyuki

“…Nucleocytoplasmic large DNA viruses (NCLDVs) infect diverse eukaryotes and form a group of viruses with capsids encapsulating large genomes. Recent studies are…”
Get full text

Global Distribution and Diversity of Marine Parmales by Ban, Hiroki, Endo, Hisashi, Team, The EukBank, Kuwata, Akira, Ogata, Hiroyuki

“…Parmales (Bolidophyceae) is a minor eukaryotic phytoplankton group, sister to diatoms, which exists as two distinct forms of unicellular organisms: silicified…”
Get full text

Tight association between microbial eukaryote and giant virus communities in the Arctic Ocean by Xia, Jun, Kameyama, Sohiko, Prodinger, Florian, Yoshida, Takashi, Cho, Kyoung‐Ho, Jung, Jinyoung, Kang, Sung‐Ho, Yang, Eun‐Jin, Ogata, Hiroyuki, Endo, Hisashi

“…Viruses are important regulatory factors of the marine microbial community including microeukaryotes. However, little is known about their role in the northern…”
Get full text

Genomic adaptation of giant viruses in polar oceans by Meng, Lingjie, Delmont, Tom O., Gaïa, Morgan, Pelletier, Eric, Fernàndez-Guerra, Antonio, Chaffron, Samuel, Neches, Russell Y., Wu, Junyi, Kaneko, Hiroto, Endo, Hisashi, Ogata, Hiroyuki

“…Despite being perennially frigid, polar oceans form an ecosystem hosting high and unique biodiversity. Various organisms show different adaptive strategies in…”
Get full text

Disentangling the Ecological Processes Shaping the Latitudinal Pattern of Phytoplankton Communities in the Pacific Ocean by Xu, Zhimeng, Cheung, Shunyan, Endo, Hisashi, Xia, Xiaomin, Wu, Wenxue, Chen, Bingzhang, Ho, Ngai Hei Ernest, Suzuki, Koji, Li, Meng, Liu, Hongbin

“…Phytoplankton diversity and community compositions vary across spaces and are fundamentally affected by several deterministic (e.g., environmental selection)…”
Get full text

Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters by Li, Yanze, Hingamp, Pascal, Watai, Hiroyasu, Endo, Hisashi, Yoshida, Takashi, Ogata, Hiroyuki

“…"Megaviridae" is a proposed family of giant viruses infecting unicellular eukaryotes. These viruses are ubiquitous in the sea and have impact on marine…”
Get full text

Quantitative Assessment of Nucleocytoplasmic Large DNA Virus and Host Interactions Predicted by Co-occurrence Analyses by Meng, Lingjie, Endo, Hisashi, Blanc-Mathieu, Romain, Chaffron, Samuel, Hernández-Velázquez, Rodrigo, Kaneko, Hiroto, Ogata, Hiroyuki

“…Nucleocytoplasmic large DNA viruses (NCLDVs) are highly diverse and abundant in marine environments. However, the knowledge of their hosts is limited because…”
Get full text

Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut by Nishiyama, Hiroki, Endo, Hisashi, Blanc-Mathieu, Romain, Ogata, Hiroyuki

“…The aim of this study was to elucidate the ecological structure of the human gut temperate bacteriophage community and its role in inflammatory bowel disease…”
Get full text

A Fast and Easy Method to Co-extract DNA and RNA from an Environmental Microbial Sample by Okazaki, Yusuke, Nguyen, Tuyen Thi, Nishihara, Arisa, Endo, Hisashi, Ogata, Hiroyuki, Nakano, Shin-ichi, Tamaki, Hideyuki

“…We herein propose a fast and easy DNA and RNA co-extraction method for environmental microbial samples. It combines bead beating and phenol-chloroform phase…”
Get full text

RNA Sequencing of Medusavirus Suggests Remodeling of the Host Nuclear Environment at an Early Infection Stage by Zhang, Ruixuan, Endo, Hisashi, Takemura, Masaharu, Ogata, Hiroyuki

“…Viruses of the phylum , or nucleo-cytoplasmic large DNA viruses (NCLDVs), undergo a cytoplasmic or nucleo-cytoplasmic cycle, the latter of which involves both…”
Get full text

The Earth Is Small for “Leviathans”: Long Distance Dispersal of Giant Viruses across Aquatic Environments by Li, Yanze, Endo, Hisashi, Gotoh, Yasuhiro, Watai, Hiroyasu, Ogawa, Nana, Blanc-Mathieu, Romain, Yoshida, Takashi, Ogata, Hiroyuki

“…Giant viruses of ‘Megaviridae’ have the ability to widely disperse around the globe. We herein examined ‘Megaviridae’ communities in four distinct aquatic…”
Get full text