Search Results - "Duhaime, Melissa"

Microbes on a Bottle: Substrate, Season and Geography Influence Community Composition of Microbes Colonizing Marine Plastic Debris by Oberbeckmann, Sonja, Osborn, A Mark, Duhaime, Melissa B

“…Plastic debris pervades in our oceans and freshwater systems and the potential ecosystem-level impacts of this anthropogenic litter require urgent evaluation…”
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Microplastics: addressing ecological risk through lessons learned by Syberg, Kristian, Khan, Farhan R., Selck, Henriette, Palmqvist, Annemette, Banta, Gary T., Daley, Jennifer, Sano, Larissa, Duhaime, Melissa B.

“…Plastic litter is an environmental problem of great concern. Despite the magnitude of the plastic pollution in our water bodies, only limited scientific…”
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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses by Roux, Simon, Brum, Jennifer R., Dutilh, Bas E., Sunagawa, Shinichi, Duhaime, Melissa B., Loy, Alexander, Poulos, Bonnie T., Solonenko, Natalie, Lara, Elena, Poulain, Julie, Pesant, Stéphane, Kandels-Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Searson, Sarah, Cruaud, Corinne, Alberti, Adriana, Duarte, Carlos M., Gasol, Josep M., Vaqué, Dolors, Bork, Peer, Acinas, Silvia G., Wincker, Patrick, Sullivan, Matthew B.

“…The assembly and analysis of complete genomes and large genomic fragments have tripled the number of known ocean viruses and uncovered the potentially…”
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Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome by Hannigan, Geoffrey D, Duhaime, Melissa B, Ruffin, 4th, Mack T, Koumpouras, Charlie C, Schloss, Patrick D

“…Human viruses (those that infect human cells) have been associated with many cancers, largely due to their mutagenic and functionally manipulative abilities…”
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Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome by Hannigan, Geoffrey D, Duhaime, Melissa B, Koutra, Danai, Schloss, Patrick D

“…Viruses and bacteria are critical components of the human microbiome and play important roles in health and disease. Most previous work has relied on studying…”
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Sulfur Oxidation Genes in Diverse Deep-Sea Viruses by Anantharaman, Karthik, Duhaime, Melissa B., Breier, John A., Wendt, Kathleen A., Toner, Brandy M., Dick, Gregory J.

“…Viruses are the most abundant biological entities in the oceans and a pervasive cause of mortality of microorganisms that drive biogeochemical cycles. Although…”
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The genetic and ecophysiological diversity of Microcystis by Dick, Gregory J., Duhaime, Melissa B., Evans, Jacob T., Errera, Reagan M., Godwin, Casey M., Kharbush, Jenan J., Nitschky, Helena S., Powers, McKenzie A., Vanderploeg, Henry A., Schmidt, Kathryn C., Smith, Derek J., Yancey, Colleen E., Zwiers, Claire C., Denef, Vincent J.

“…Summary Microcystis is a cyanobacterium that forms toxic blooms in freshwater ecosystems around the world. Biological variation among taxa within the genus is…”
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Phage-specific metabolic reprogramming of virocells by Howard-Varona, Cristina, Lindback, Morgan M., Bastien, G. Eric, Solonenko, Natalie, Zayed, Ahmed A., Jang, HoBin, Andreopoulos, Bill, Brewer, Heather M., Glavina del Rio, Tijana, Adkins, Joshua N., Paul, Subhadeep, Sullivan, Matthew B., Duhaime, Melissa B.

“…Ocean viruses are abundant and infect 20–40% of surface microbes. Infected cells, termed virocells, are thus a predominant microbial state. Yet, virocells and…”
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Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities by Berry, Michelle A., Davis, Timothy W., Cory, Rose M., Duhaime, Melissa B., Johengen, Thomas H., Kling, George W., Marino, John A., Den Uyl, Paul A., Gossiaux, Duane, Dick, Gregory J., Denef, Vincent J.

“…Summary Human activities are causing a global proliferation of cyanobacterial harmful algal blooms (CHABs), yet we have limited understanding of how these…”
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Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method by Duhaime, Melissa B., Deng, Li, Poulos, Bonnie T., Sullivan, Matthew B.

“…Summary Metagenomics generates and tests hypotheses about dynamics and mechanistic drivers in wild populations, yet commonly suffers from insufficient (< 1 ng)…”
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Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline by Duhaime, Melissa B, Sullivan, Matthew B

“…Abstract As new environments are studied, viruses consistently emerge as important and prominent players in natural and man-made ecosystems. However, much of…”
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Distribution and Modeled Transport of Plastic Pollution in the Great Lakes, the World's Largest Freshwater Resource by Cable, Rachel N., Beletsky, Dmitry, Beletsky, Raisa, Wigginton, Krista, Locke, Brendan W., Duhaime, Melissa B.

“…Most plastic pollution originates on land. As such, freshwater bodies serve as conduits for the transport of plastic litter to the ocean. Understanding the…”
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Metagenomic Quantification of Genes with Internal Standards by Crossette, Emily, Gumm, Jordan, Langenfeld, Kathryn, Raskin, Lutgarde, Duhaime, Melissa, Wigginton, Krista

“…We demonstrate that an assembly-independent and spike-in facilitated metagenomic quantification approach can be used to screen and quantify over 2,000 genes…”
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Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses by Allers, Elke, Moraru, Cristina, Duhaime, Melissa B., Beneze, Erica, Solonenko, Natalie, Barrero-Canosa, Jimena, Amann, Rudolf, Sullivan, Matthew B.

“…Summary Microbes drive the biogeochemical cycles that fuel planet Earth, and their viruses (phages) alter microbial population structure, genome repertoire,…”
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Microbial and Viral Communities and Their Antibiotic Resistance Genes Throughout a Hospital Wastewater Treatment System by Petrovich, Morgan L, Zilberman, Adi, Kaplan, Aviv, Eliraz, Gefen R, Wang, Yubo, Langenfeld, Kathryn, Duhaime, Melissa, Wigginton, Krista, Poretsky, Rachel, Avisar, Dror, Wells, George F

“…Antibiotic resistance poses a serious threat to global public health, and antibiotic resistance determinants can enter natural aquatic systems through…”
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Virus-host interactions predictor (VHIP): Machine learning approach to resolve microbial virus-host interaction networks by Bastien, G Eric, Cable, Rachel N, Batterbee, Cecelia, Wing, A J, Zaman, Luis, Duhaime, Melissa B

“…Viruses of microbes are ubiquitous biological entities that reprogram their hosts' metabolisms during infection in order to produce viral progeny, impacting…”
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Genomic insights into the coupling of a Chlorella-like microeukaryote and sulfur bacteria in the chemocline of permanently stratified Lake Cadagno by Saini, Jaspreet S., Manni, Mosè, Hassler, Christel, Cable, Rachel N., Duhaime, Melissa B., Zdobnov, Evgeny M.

“…Meromictic Lake Cadagno is a permanently stratified system with a persistent microbial bloom within the oxic-anoxic boundary called the chemocline. The…”
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Comparison of ultrafiltration and iron chloride flocculation in the preparation of aquatic viromes from contrasting sample types by Langenfeld, Kathryn, Chin, Kaitlyn, Roy, Ariel, Wigginton, Krista, Duhaime, Melissa B

“…Viral metagenomes (viromes) are a valuable untargeted tool for studying viral diversity and the central roles viruses play in host disease, ecology, and…”
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Bacterial, Phytoplankton, and Viral Distributions and Their Biogeochemical Contexts in Meromictic Lake Cadagno Offer Insights into the Proterozoic Ocean Microbial Loop by Saini, Jaspreet S., Hassler, Christel, Cable, Rachel, Fourquez, Marion, Danza, Francesco, Roman, Samuele, Tonolla, Mauro, Storelli, Nicola, Jacquet, Stéphan, Zdobnov, Evgeny M., Duhaime, Melissa B.

“…Lake Cadagno, a permanently stratified high-alpine lake with a persistent microbial bloom in its chemocline, has long been considered a model for the…”
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Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU Concept by Duhaime, Melissa B, Solonenko, Natalie, Roux, Simon, Verberkmoes, Nathan C, Wichels, Antje, Sullivan, Matthew B

“…Viruses influence the ecology and evolutionary trajectory of microbial communities. Yet our understanding of their roles in ecosystems is limited by the…”
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