Search Results - "Drabék, Elliott"

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome by Zupancic, Margaret L, Cantarel, Brandi L, Liu, Zhenqiu, Drabek, Elliott F, Ryan, Kathleen A, Cirimotich, Shana, Jones, Cheron, Knight, Rob, Walters, William A, Knights, Daniel, Mongodin, Emmanuel F, Horenstein, Richard B, Mitchell, Braxton D, Steinle, Nanette, Snitker, Soren, Shuldiner, Alan R, Fraser, Claire M

“…Obesity has been linked to the human gut microbiota; however, the contribution of gut bacterial species to the obese phenotype remains controversial because of…”
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Simultaneous transcriptional profiling of bacteria and their host cells by Humphrys, Michael S, Creasy, Todd, Sun, Yezhou, Shetty, Amol C, Chibucos, Marcus C, Drabek, Elliott F, Fraser, Claire M, Farooq, Umar, Sengamalay, Naomi, Ott, Sandy, Shou, Huizhong, Bavoil, Patrik M, Mahurkar, Anup, Myers, Garry S A

“…We developed an RNA-Seq-based method to simultaneously capture prokaryotic and eukaryotic expression profiles of cells infected with intracellular bacteria. As…”
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Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses by Eloe-Fadrosh, Emiley A, McArthur, Monica A, Seekatz, Anna M, Drabek, Elliott F, Rasko, David A, Sztein, Marcelo B, Fraser, Claire M

“…The resident microbial consortia of the human gastrointestinal tract play an integral role in modulating immune responses both locally and systemically…”
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Transcriptional attenuation controls macrolide inducible efflux and resistance in Streptococcus pneumoniae and in other Gram-positive bacteria containing mef/mel(msr(D)) elements by Chancey, Scott T, Bai, Xianhe, Kumar, Nikhil, Drabek, Elliott F, Daugherty, Sean C, Colon, Thomas, Ott, Sandra, Sengamalay, Naomi, Sadzewicz, Lisa, Tallon, Luke J, Fraser, Claire M, Tettelin, Hervé, Stephens, David S

“…Macrolide resistance, emerging in Streptococcus pneumoniae and other Gram-positive bacteria, is increasingly due to efflux pumps encoded by mef/mel(msr)…”
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Functional dynamics of the gut microbiome in elderly people during probiotic consumption by Eloe-Fadrosh, Emiley A, Brady, Arthur, Crabtree, Jonathan, Drabek, Elliott F, Ma, Bing, Mahurkar, Anup, Ravel, Jacques, Haverkamp, Miriam, Fiorino, Anne-Maria, Botelho, Christine, Andreyeva, Irina, Hibberd, Patricia L, Fraser, Claire M

“…A mechanistic understanding of the purported health benefits conferred by consumption of probiotic bacteria has been limited by our knowledge of the resident…”
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Association of a Novel Mutation in the Plasmodium falciparum Chloroquine Resistance Transporter With Decreased Piperaquine Sensitivity by Agrawal, Sonia, Moser, Kara A., Morton, Lindsay, Cummings, Michael P., Parihar, Ankita, Dwivedi, Ankit, Shetty, Amol C., Drabek, Elliott F., Jacob, Christopher G., Henrich, Philipp P., Parobek, Christian M., Jongsakul, Krisada, Huy, Rekol, Spring, Michele D., Lanteri, Charlotte A., Chaorattanakawee, Suwanna, Lon, Chanthap, Fukuda, Mark M., Saunders, David L., Fidock, David A., Lin, Jessica T., Juliano, Jonathan J., Plowe, Christopher V., Silva, Joana C., Takala-Harrison, Shannon

“…Background. Amplified copy number in the plasmepsin II/III genes within Plasmodium falciparum has been associated with decreased sensitivity to piperaquine. To…”
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The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence by Norling, Martin, Bishop, Richard P, Pelle, Roger, Qi, Weihong, Henson, Sonal, Drábek, Elliott F, Tretina, Kyle, Odongo, David, Mwaura, Stephen, Njoroge, Thomas, Bongcam-Rudloff, Erik, Daubenberger, Claudia A, Silva, Joana C

“…There are no commercially available vaccines against human protozoan parasitic diseases, despite the success of vaccination-induced long-term protection…”
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Convergent antibody evolution and clonotype expansion following influenza virus vaccination by Forgacs, David, Abreu, Rodrigo B, Sautto, Giuseppe A, Kirchenbaum, Greg A, Drabek, Elliott, Williamson, Kevin S, Kim, Dongkyoon, Emerling, Daniel E, Ross, Ted M

“…Recent advances in high-throughput single cell sequencing have opened up new avenues into the investigation of B cell receptor (BCR) repertoires. In this…”
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New var reconstruction algorithm exposes high var sequence diversity in a single geographic location in Mali by Dara, Antoine, Drábek, Elliott F, Travassos, Mark A, Moser, Kara A, Delcher, Arthur L, Su, Qi, Hostelley, Timothy, Coulibaly, Drissa, Daou, Modibo, Dembele, Ahmadou, Diarra, Issa, Kone, Abdoulaye K, Kouriba, Bourema, Laurens, Matthew B, Niangaly, Amadou, Traore, Karim, Tolo, Youssouf, Fraser, Claire M, Thera, Mahamadou A, Djimde, Abdoulaye A, Doumbo, Ogobara K, Plowe, Christopher V, Silva, Joana C

“…Encoded by the var gene family, highly variable Plasmodium falciparum erythrocyte membrane protein-1 (PfEMP1) proteins mediate tissue-specific cytoadherence of…”
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Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation by Mongodin, Emmanuel F, Casjens, Sherwood R, Bruno, John F, Xu, Yun, Drabek, Elliott Franco, Riley, David R, Cantarel, Brandi L, Pagan, Pedro E, Hernandez, Yozen A, Vargas, Levy C, Dunn, John J, Schutzer, Steven E, Fraser, Claire M, Qiu, Wei-Gang, Luft, Benjamin J

“…Lyme disease is caused by spirochete bacteria from the Borrelia burgdorferi sensu lato (B. burgdorferi s.l.) species complex. To reconstruct the evolution of…”
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Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity by Palmateer, Nicholas C, Tretina, Kyle, Orvis, Joshua, Ifeonu, Olukemi O, Crabtree, Jonathan, Drabék, Elliott, Pelle, Roger, Awino, Elias, Gotia, Hanzel T, Munro, James B, Tallon, Luke, Morrison, W Ivan, Daubenberger, Claudia A, Nene, Vish, Knowles, Donald P, Bishop, Richard P, Silva, Joana C

“…Theileria parva is an economically important, intracellular, tick-transmitted parasite of cattle. A live vaccine against the parasite is effective against…”
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A new method for sequencing the hypervariable Plasmodium falciparum gene var2csa from clinical samples by Dara, Antoine, Travassos, Mark A, Adams, Matthew, Schaffer DeRoo, Sarah, Drábek, Elliott F, Agrawal, Sonia, Laufer, Miriam K, Plowe, Christopher V, Silva, Joana C

“…VAR2CSA, a member of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) family, mediates the binding of P. falciparum-infected erythrocytes to…”
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Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential by Moser, Kara A, Drábek, Elliott F, Dwivedi, Ankit, Stucke, Emily M, Crabtree, Jonathan, Dara, Antoine, Shah, Zalak, Adams, Matthew, Li, Tao, Rodrigues, Priscila T, Koren, Sergey, Phillippy, Adam M, Munro, James B, Ouattara, Amed, Sparklin, Benjamin C, Dunning Hotopp, Julie C, Lyke, Kirsten E, Sadzewicz, Lisa, Tallon, Luke J, Spring, Michele D, Jongsakul, Krisada, Lon, Chanthap, Saunders, David L, Ferreira, Marcelo U, Nyunt, Myaing M, Laufer, Miriam K, Travassos, Mark A, Sauerwein, Robert W, Takala-Harrison, Shannon, Fraser, Claire M, Sim, B Kim Lee, Hoffman, Stephen L, Plowe, Christopher V, Silva, Joana C

“…Plasmodium falciparum (Pf) whole-organism sporozoite vaccines have been shown to provide significant protection against controlled human malaria infection…”
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Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data by Liu, Zhenqiu, Hsiao, William, Cantarel, Brandi L., Drábek, Elliott Franco, Fraser-Liggett, Claire

“…Motivation: Direct sequencing of microbes in human ecosystems (the human microbiome) has complemented single genome cultivation and sequencing to understand…”
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Genome Sequences of the Zoonotic Pathogens Chlamydia psittaci 6BC and Cal10 by GRINBLAT-HUSE, Valerie, DRABEK, Elliott F, MYERS, Garry S. A, HUOT CREASY, Heather, DAUGHERTY, Sean C, JONES, Kristine M, SANTANA-CRUZ, Ivette, TALLON, Luke J, READ, Timothy D, HATCH, Thomas P, BAVOIL, Patrik

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Abstract P2-01-11: Single-cell sequencing of the blood T cell repertoire before and after trastuzumab treatment in early stage HER2+ breast cancer by Vivian, John, Walter, Kimberly, Drabek, Elliott, Haaser, Nicole, Levin, Maren K., Rodriguez, Esther San Roman, Peck, Kendra, Nguyen, Ngan, Millward, Carl, Benjamin, Jonathan, Robinson, William H., O'Shaughnessy, Joyce A.

“…Abstract Background: Human epidermal growth factor receptor 2 (HER2) positivity in breast cancer portends an aggressive tumor behavior and poor prognosis and…”
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Abstract 615: Increased somatic hypermutation in the immunoglobulin sequences of melanoma patients who have durable response to checkpoint inhibitor therapy by Nguyen, Ngan, Mamchak, Alusha, Severgnini, Mariano, Williamson, Kevin S., Wu, Xinqi, Drabek, Elliott F., Manos, Michael, Chen, Xiaomu, Tang, Xiaobin, Amiri, Zoe, Carroll, Chantia, Leung, Yvonne, Kim, Dongkyoon, Volkmuth, Wayne, Greenberg, Norman, Emerling, Daniel, Robinson, William H., Cavet, Guy, Hodi, F. Stephen

“…Abstract Patient immune response to tumor can drive profound and durable clinical benefit, but the contribution of antibodies to this benefit is poorly…”
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Genome Sequence of Mycoplasma feriruminatoris sp. nov., a Fast-Growing Mycoplasma Species by Fischer, Anne, Santana-Cruz, Ivette, Giglio, Michelle, Nadendla, Suvarna, Drabek, Elliott, Vilei, Edy M, Frey, Joachim, Jores, Joerg

“…Members of the " cluster" represent important livestock pathogens worldwide. We report the genome sequence of sp. nov., the closest relative to the " cluster"…”
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Transcriptional Attenuation Controls Macrolide Inducible Efflux and Resistance in Streptococcus pneumoniae and in Other Gram-Positive Bacteria Containing mef/mel(msr(D)) Elements: e0116254 by Chancey, Scott T, Bai, Xianhe, Kumar, Nikhil, Drabek, Elliott F, Daugherty, Sean C, Colon, Thomas, Ott, Sandra, Sengamalay, Naomi, Sadzewicz, Lisa, Tallon, Luke J

“…Macrolide resistance, emerging in Streptococcus pneumoniae and other Gram-positive bacteria, is increasingly due to efflux pumps encoded by mef/mel(msr)…”
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Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells: e80597 by Humphrys, Michael S, Creasy, Todd, Sun, Yezhou, Shetty, Amol C, Chibucos, Marcus C, Drabek, Elliott F, Fraser, Claire M, Farooq, Umar, Sengamalay, Naomi, Ott, Sandy

“…We developed an RNA-Seq-based method to simultaneously capture prokaryotic and eukaryotic expression profiles of cells infected with intracellular bacteria. As…”
Get full text