Search Results - "Dooling, J."

Genomic Landscape of Non-Small Cell Lung Cancer in Smokers and Never-Smokers by Govindan, Ramaswamy, Ding, Li, Griffith, Malachi, Subramanian, Janakiraman, Dees, Nathan D., Kanchi, Krishna L., Maher, Christopher A., Fulton, Robert, Fulton, Lucinda, Wallis, John, Chen, Ken, Walker, Jason, McDonald, Sandra, Bose, Ron, Ornitz, David, Xiong, Donghai, You, Ming, Dooling, David J., Watson, Mark, Mardis, Elaine R., Wilson, Richard K.

“…We report the results of whole-genome and transcriptome sequencing of tumor and adjacent normal tissue samples from 17 patients with non-small cell lung…”
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SomaticSniper: identification of somatic point mutations in whole genome sequencing data by Larson, David E., Harris, Christopher C., Chen, Ken, Koboldt, Daniel C., Abbott, Travis E., Dooling, David J., Ley, Timothy J., Mardis, Elaine R., Wilson, Richard K., Ding, Li

“…Motivation: The sequencing of tumors and their matched normals is frequently used to study the genetic composition of cancer. Despite this fact, there remains…”
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Viscoelasticity of the polydomain-monodomain transition in main-chain liquid crystal elastomers by Azoug, A., Vasconcellos, V., Dooling, J., Saed, M., Yakacki, C.M., Nguyen, T.D.

“…The goal of this study was to explore the rate-dependent behavior of the stretch-induced polydomain-monodomain (PM) transition of a liquid crystal elastomer…”
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Rescue of DNA damage after constricted migration reveals a mechano-regulated threshold for cell cycle by Xia, Yuntao, Pfeifer, Charlotte R, Zhu, Kuangzheng, Irianto, Jerome, Liu, Dazhen, Pannell, Kalia, Chen, Emily J, Dooling, Lawrence J, Tobin, Michael P, Wang, Mai, Ivanovska, Irena L, Smith, Lucas R, Greenberg, Roger A, Discher, Dennis E

“…Migration through 3D constrictions can cause nuclear rupture and mislocalization of nuclear proteins, but damage to DNA remains uncertain, as does any effect…”
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Scaling laws indicate distinct nucleation mechanisms of holes in the nuclear lamina by Deviri, Dan, Pfeifer, Charlotte R., Dooling, Lawrence J., Ivanovska, Irena L., Discher, Dennis E., Safran, Samuel A.

“…During a first-order phase transition, an interfacial layer is formed between the coexisting phases and kinetically limits homogeneous nucleation of the new…”
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Discrimination of natural acoustic variation in vocal signals by Fishbein, Adam R., Prior, Nora H., Brown, Jane A., Ball, Gregory F., Dooling, Robert J.

“…Studies of acoustic communication often focus on the categories and units of vocalizations, but subtle variation also occurs in how these signals are uttered…”
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Detection and discrimination of natural calls in masking noise by birds: estimating the active space of a signal by Lohr, Bernard, Wright, Timothy F., Dooling, Robert J.

“…We tested the ability of birds to detect and discriminate natural vocal signals in the presence of masking noise using operant conditioning. Masked thresholds…”
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Engineering the Dynamic Properties of Protein Networks through Sequence Variation by Dooling, Lawrence J, Tirrell, David A

“…The dynamic behavior of macromolecular networks dominates the mechanical properties of soft materials and influences biological processes at multiple length…”
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Constraints on vocal production learning in budgerigars (Melopsittacus undulates) by Osmanski, Michael S., Seki, Yoshimasa, Dooling, Robert J.

“…Budgerigars ( Melopsittacus undulatus ) are small Australian parrots with a well-documented, learned vocal repertoire and a high degree of vocal production…”
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Chromosomal instability induced in cancer can enhance macrophage-initiated immune responses that include anti-tumor IgG by Hayes, Brandon H, Wang, Mai, Zhu, Hui, Phan, Steven H, Dooling, Lawrence J, Andrechak, Jason C, Chang, Alexander H, Tobin, Michael P, Ontko, Nicholas M, Marchena, Tristan, Discher, Dennis E

“…Solid tumors generally exhibit chromosome copy number variation, which is typically caused by chromosomal instability (CIN) in mitosis. The resulting…”
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Gaussian curvature dilutes the nuclear lamina, favoring nuclear rupture, especially at high strain rate by Pfeifer, Charlotte R., Tobin, Michael P., Cho, Sangkyun, Vashisth, Manasvita, Dooling, Lawrence J., Vazquez, Lizeth Lopez, Ricci-De Lucca, Emma G., Simon, Keiann T., Discher, Dennis E.

“…Nuclear rupture has long been associated with deficits or defects in lamins, with recent results also indicating a role for actomyosin stress, but key physical…”
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The effect of altered auditory feedback on control of vocal production in budgerigars ( Melopsittacus undulatus ) by Osmanski, Michael S., Dooling, Robert J.

“…Budgerigars learn their vocalizations by reference to auditory information and they retain the ability to learn new vocalizations throughout life. Auditory…”
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Early intervention service intensity and young children's home participation by Khetani, M A, McManus, B M, Albrecht, E C, Kaelin, V C, Dooling-Litfin, J K, Scully, E A

“…Young children with developmental disabilities and delays spend significant amounts of time at home, show decreased participation in home-based activities, and…”
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The auditory brainstem response in two lizard species by Brittan-Powell, Elizabeth F., Christensen-Dalsgaard, Jakob, Tang, Yezhong, Carr, Catherine, Dooling, Robert J.

“…Although lizards have highly sensitive ears, it is difficult to condition them to sound, making standard psychophysical assays of hearing sensitivity…”
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Relative salience of envelope and fine structure cues in zebra finch song by Vernaleo, Beth A., Dooling, Robert J.

“…Zebra finches produce a learned song that is rich in harmonic structure and highly stereotyped. More is generally known about how birds learn and produce this…”
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RB1 gene inactivation by chromothripsis in human retinoblastoma by McEvoy, Justina, Nagahawatte, Panduka, Finkelstein, David, Richards-Yutz, Jennifer, Valentine, Marcus, Ma, Jing, Mullighan, Charles, Song, Guangchun, Chen, Xiang, Wilson, Matthew, Brennan, Rachel, Pounds, Stanley, Becksfort, Jared, Huether, Robert, Lu, Charles, Fulton, Robert S, Fulton, Lucinda L, Hong, Xin, Dooling, David J, Ochoa, Kerri, Mardis, Elaine R, Wilson, Richard K, Easton, John, Zhang, Jinghui, Downing, James R, Ganguly, Arupa, Dyer, Michael A

“…Retinoblastoma is a rare childhood cancer of the developing retina. Most retinoblastomas initiate with biallelic inactivation of the RB1 gene through diverse…”
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Collimator irradiation studies in the Argonne Advanced Photon Source at energy densities expected in next-generation storage ring light sources by Dooling, J., Borland, M., Berg, W., Calvey, J., Decker, G., Emery, L., Harkay, K., Lindberg, R., Navrotksi, G., Sajaev, V., Shoaf, S., Sun, Y. P., Wootton, K. P., Xiao, A., Grannan, A., Lumpkin, A. H.

“…The Advanced Photon Source (APS) team is building a fourth-generation storage ring (4GSR), replacing the present double-bend achromat lattice with a multibend…”
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Return of function after hair cell regeneration by Ryals, Brenda M., Dent, Micheal L., Dooling, Robert J.

“…The ultimate goal of hair cell regeneration is to restore functional hearing. Because birds begin perceiving and producing song early in life, they provide a…”
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The Origin and Evolution of Mutations in Acute Myeloid Leukemia by Welch, John S., Ley, Timothy J., Link, Daniel C., Miller, Christopher A., Larson, David E., Koboldt, Daniel C., Wartman, Lukas D., Lamprecht, Tamara L., Liu, Fulu, Xia, Jun, Kandoth, Cyriac, Fulton, Robert S., McLellan, Michael D., Dooling, David J., Wallis, John W., Chen, Ken, Harris, Christopher C., Schmidt, Heather K., Kalicki-Veizer, Joelle M., Lu, Charles, Zhang, Qunyuan, Lin, Ling, O’Laughlin, Michelle D., McMichael, Joshua F., Delehaunty, Kim D., Fulton, Lucinda A., Magrini, Vincent J., McGrath, Sean D., Demeter, Ryan T., Vickery, Tammi L., Hundal, Jasreet, Cook, Lisa L., Swift, Gary W., Reed, Jerry P., Alldredge, Patricia A., Wylie, Todd N., Walker, Jason R., Watson, Mark A., Heath, Sharon E., Shannon, William D., Varghese, Nobish, Nagarajan, Rakesh, Payton, Jacqueline E., Baty, Jack D., Kulkarni, Shashikant, Klco, Jeffery M., Tomasson, Michael H., Westervelt, Peter, Walter, Matthew J., Graubert, Timothy A., DiPersio, John F., Ding, Li, Mardis, Elaine R., Wilson, Richard K.

“…Most mutations in cancer genomes are thought to be acquired after the initiating event, which may cause genomic instability and drive clonal evolution…”
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An automated device for appetitive conditioning in zebrafish (Danio rerio) by Manabe, Kazuchika, Dooling, R J, Takaku, Shinichi

“…An automated device and a procedure for the operant conditioning individual zebrafish were developed. The key feature of this procedure was the construction of…”
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