Search Results - "Doherty, Colleen J."

Regulation of the Arabidopsis CBF regulon by a complex low‐temperature regulatory network by Park, Sunchung, Lee, Chin‐Mei, Doherty, Colleen J, Gilmour, Sarah J, Kim, YongSig, Thomashow, Michael F

“…Exposure of Arabidopsis thaliana plants to low non‐freezing temperatures results in an increase in freezing tolerance that involves action of the C‐repeat…”
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Circadian control of global gene expression patterns by Doherty, Colleen J, Kay, Steve A

“…An internal time-keeping mechanism has been observed in almost every organism studied from archaea to humans. This circadian clock provides a competitive…”
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Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis by Nagel, Dawn H, Doherty, Colleen J, Pruneda-Paz, Jose L, Schmitz, Robert J, Ecker, Joseph R, Kay, Steve A

“…The circadian clock in Arabidopsis exerts a critical role in timing multiple biological processes and stress responses through the regulation of up to 80% of…”
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Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor by Gendron, Joshua M, Pruneda-Paz, José L, Doherty, Colleen J, Gross, Andrew M, Kang, S. Earl, Kay, Steve A

“…The first described feedback loop of the Arabidopsis circadian clock is based on reciprocal regulation between TIMING OF CAB EXPRESSION 1 (TOC1) and CIRCADIAN…”
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CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses by Lai, Alvina Grace, Doherty, Colleen J, Mueller-Roeber, Bernd, Kay, Steve A, Schippers, Jos H. M, Dijkwel, Paul P

“…Organisms have evolved endogenous biological clocks as internal timekeepers to coordinate metabolic processes with the external environment. Here, we seek to…”
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A Genome-Scale Resource for the Functional Characterization of Arabidopsis Transcription Factors by Pruneda-Paz, Jose L., Breton, Ghislain, Nagel, Dawn H., Kang, S. Earl, Bonaldi, Katia, Doherty, Colleen J., Ravelo, Stephanie, Galli, Mary, Ecker, Joseph R., Kay, Steve A.

“…Extensive transcriptional networks play major roles in cellular and organismal functions. Transcript levels are in part determined by the combinatorial and…”
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Warm nights disrupt transcriptome rhythms in field-grown rice panicles by Desai, Jigar S., Lawas, Lovely Mae F., Valente, Ashlee M., Leman, Adam R., Grinevich, Dmitry O., Jagadish, S. V. Krishna, Doherty, Colleen J.

“…In rice, a small increase in nighttime temperature reduces grain yield and quality. How warm nighttime temperatures (WNT) produce these detrimental effects is…”
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Conserved plant transcriptional responses to microgravity from two consecutive spaceflight experiments by Land, Eric S, Sheppard, James, Doherty, Colleen J, Perera, Imara Y

“…Understanding how plants adapt to the space environment is essential, as plants will be a valuable component of long duration space missions. Several…”
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Comparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple by Yow, Ashley G., Laosuntisuk, Kanjana, Young, Roberto A., Doherty, Colleen J., Gillitt, Nicholas, Perkins-Veazie, Penelope, Jenny Xiang, Qiu-Yun, Iorizzo, Massimo

“…Pineapple originates from tropical regions in South America and is therefore significantly impacted by cold stress. Periodic cold events in the equatorial…”
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Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice by Bheemanahalli, Raju, Knight, Montana, Quinones, Cherryl, Doherty, Colleen J., Jagadish, S. V. Krishna

“…High night temperatures (HNT) are shown to significantly reduce rice ( Oryza sativa L.) yield and quality. A better understanding of the genetic architecture…”
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Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes by Desai, Jigar S., Sartor, Ryan C., Lawas, Lovely Mae, Jagadish, S. V. Krishna, Doherty, Colleen J.

“…Organisms respond to changes in their environment through transcriptional regulatory networks (TRNs). The regulatory hierarchy of these networks can be…”
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Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots by Sheppard, James, Land, Eric S., Toennisson, Tiffany Aurora, Doherty, Colleen J., Perera, Imara Y.

“…Although many reports characterize the transcriptional response of Arabidopsis seedlings to microgravity, few investigate the effect of partial or fractional…”
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The Game of Timing: Circadian Rhythms Intersect with Changing Environments by Laosuntisuk, Kanjana, Elorriaga, Estefania, Doherty, Colleen J

“…Recurring patterns are an integral part of life on Earth. Through evolution or breeding, plants have acquired systems that coordinate with the cyclic patterns…”
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Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions by Scarboro, Clifton G., Ruzsa, Stephanie M., Doherty, Colleen J., Kudenov, Michael W.

“…Gray mold disease caused by the fungus Botrytis cinerea damages many crop hosts worldwide and is responsible for heavy economic losses. Early diagnosis and…”
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Neural Net Classification Combined With Movement Analysis to Evaluate Setaria viridis as a Model System for Time of Day of Anther Appearance by Desai, Jigar S, Slabaugh, Erin, Liebelt, Donna J, Fredenberg, Jacob D, Gray, Benjamin N, Jagadish, S V Krishna, Wilkins, Olivia, Doherty, Colleen J

“…In many plant species, the time of day at which flowers open to permit pollination is tightly regulated. Proper time of flower opening, or Time of Day of…”
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Directions for research and training in plant omics: Big Questions and Big Data by Argueso, Cristiana T., Assmann, Sarah M., Birnbaum, Kenneth D., Chen, Sixue, Dinneny, José R., Doherty, Colleen J., Eveland, Andrea L., Friesner, Joanna, Greenlee, Vanessa R., Law, Julie A., Marshall‐Colón, Amy, Mason, Grace Alex, O'Lexy, Ruby, Peck, Scott C., Schmitz, Robert J., Song, Liang, Stern, David, Varagona, Marguerite J., Walley, Justin W., Williams, Cranos M.

“…A key remit of the NSF‐funded “Arabidopsis Research and Training for the 21st Century” (ART‐21) Research Coordination Network has been to convene a series of…”
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Auxin–cytokinin interplay shapes root functionality under low-temperature stress by Tiwari, Manish, Kumar, Ritesh, Subramanian, Senthil, Doherty, Colleen J., Jagadish, S.V. Krishna

“…A healthy overall plant stature indispensably requires a firm base, and the root system must therefore be tolerant to low-temperature stress. The root system…”
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Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals by Liebelt, Donna J., Jordan, Juliette T., Doherty, Colleen J.

“…Plants regulate molecular bioactivity in response to daily and seasonal environmental fluctuations in temperature, light, humidity, and precipitation. These…”
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Roles for Arabidopsis CAMTA Transcription Factors in Cold-Regulated Gene Expression and Freezing Tolerance by Doherty, Colleen J, Van Buskirk, Heather A, Myers, Susan J, Thomashow, Michael F

“…The Arabidopsis thaliana CBF cold response pathway plays a central role in cold acclimation. It is characterized by rapid cold induction of genes encoding the…”
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A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber by Vennapusa, Amaranatha R., Somayanda, Impa M., Doherty, Colleen J., Jagadish, S. V. Krishna

“…Using existing protocols, RNA extracted from seeds rich in starch often results in poor quality RNA, making it inappropriate for downstream applications…”
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