Search Results - "Dobrev, Stefan"
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Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca2+/Ln3+ Competition
Published in International journal of molecular sciences (27-03-2023)“…Lanthanides, the 14 4f-block elements plus Lanthanum, have been extensively used to study the structure and biochemical properties of metalloproteins. The…”
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Metal-Assisted Complexation of Fluorogenic Dyes by Cucurbit[7]uril and Cucurbit[8]uril: A DFT Evaluation of the Key Factors Governing the Host-Guest Recognition
Published in Molecules (Basel, Switzerland) (05-02-2023)“…With the emergence of host-guest systems, a novel branch of complexation chemistry has found wide application in industries such as food, pharmacy, medicine,…”
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N -Methyl- and N -Phenylpiperazine Functionalized Styryl Dyes Inside Cucurbiturils: Theoretical Assessment of the Factors Governing the Host-Guest Recognition
Published in Molecules (Basel, Switzerland) (16-12-2023)“…The family of cucurbiturils (CBs), the unique pumpkin-shaped macrocycles, has received great attention over the past four decades owing to their remarkable…”
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Theoretical Assessment of the Ligand/Metal/Quadruplex Recognition in the Non-Canonical Nucleic Acids Structures
Published in Molecules (Basel, Switzerland) (17-08-2023)“…Quadruplexes (GQs), peculiar DNA/RNA motifs concentrated in specific genomic regions, play a vital role in biological processes including telomere stability…”
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Density Functional Theory Prediction of Laser Dyes-Cucurbit[7]uril Binding Affinities
Published in Molecules (Basel, Switzerland) (01-09-2024)“…Among a variety of diverse host molecules distinguished by specific characteristics, the cucurbit[n]uril (CB) family stands out, being widely known for the…”
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Asynchronous Gathering in a Dangerous Ring
Published in Algorithms (26-04-2023)“…Consider a set of k identical asynchronous mobile agents located in an anonymous ring of n nodes. The classical Gather (or Rendezvous) problem requires all…”
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Deciphering the mechanism of γ-cyclodextrin's hydrophobic cavity hydration: an integrated experimental and theoretical study
Published in Beilstein journal of organic chemistry (17-10-2024)“…Cyclodextrins (CDs) are host systems with inherent capability for inclusion complex formation with various molecular entities, mostly hydrophobic substances…”
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Complexation of trivalent metal cations (Al 3+ , Ga 3+ , In 3+ , La 3+ , Lu 3+ ) to cucurbiturils: a DFT/SMD evaluation of the key factors governing the host-guest recognition
Published in Physical chemistry chemical physics : PCCP (09-03-2022)“…Cucurbiturils (CBs), the pumpkin-shaped macrocycles, are suitable hosts for an array of neutral and cationic species. A plethora of host-guest complexes…”
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Naphthalimide-Based Amphiphiles: Synthesis and DFT Studies of the Aggregation and Interaction of a Simplified Model System with Water Molecules
Published in Molecules (Basel, Switzerland) (04-09-2024)“…Systems containing amphiphilic/pathic molecules have the tremendous capacity to self-assemble under appropriate conditions to form morphologies with…”
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In Silico Analysis of the Ga3+/Fe3+ Competition for Binding the Iron-Scavenging Siderophores of P. aeruginosa—Implementation of Three Gallium-Based Complexes in the “Trojan Horse” Antibacterial Strategy
Published in Biomolecules (Basel, Switzerland) (16-04-2024)“…The emergence of multidrug-resistant (MDR) microorganisms combined with the ever-draining antibiotic pipeline poses a disturbing and immensely growing public…”
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Cu + /Ag + Competition in Type I Copper Proteins (T1Cu)
Published in Biomolecules (Basel, Switzerland) (01-04-2023)“…Due to the similarity in the basic coordination behavior of their mono-charged cations, silver biochemistry is known to be linked to that of copper in…”
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Synthesis, In Silico Logp Study, and In Vivo Analgesic Activity of Analogs of Tetrapeptide FELL
Published in Pharmaceuticals (Basel, Switzerland) (21-08-2023)“…Background: The inflammatory process represents a specific response of the organism’s immune system. More often, it is related to the rising pain in the…”
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Synthesis, Antiproliferative Effect and In Silico LogP Prediction of BIM-23052 Analogs Containing Tyr Instead of Phe
Published in Pharmaceutics (31-03-2023)“…(1) Background: Hydrophobicity (or lipophilicity) is a limiting factor in the ability of molecules to pass through cell membranes and to perform their…”
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Unusual Para-Substituent Effects on the Intramolecular Hydrogen Bond in Hydrazone-Based Switches: Insights from Chemical Landscape Analysis and DFT Calculations
Published in Physchem (01-09-2021)“…Тhe adequacy of chemical property predictions strongly depends on the structure representation, including the proper treatment of the tautomeric and isomeric…”
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Exploring an unknown dangerous graph using tokens
Published in Theoretical computer science (11-02-2013)“…Consider a team of (one or more) mobile agents operating in a graph G. Unaware of the graph topology and starting from the same node, the team must explore the…”
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Mobile search for a black hole in an anonymous ring
Published in Algorithmica (01-05-2007)Get full text
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Searching for a black hole in arbitrary networks: optimal mobile agents protocols
Published in Distributed computing (01-09-2006)“…Consider a networked environment, supporting mobile agents, where there is a black hole: a harmful host that disposes of visiting agents upon their arrival,…”
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Theoretical Insight into the Phosphate-Targeted Silver’s Antibacterial Action: Differentiation between Gram (+) and Gram (−) Bacteria
Published in Inorganic chemistry (04-07-2022)“…Although silver is one of the first metals finding broad applications in everyday life, specific key points of the intimate mechanism of its…”
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Zinc and Its Critical Role in Retinitis pigmentosa: Insights from DFT/SMD Calculations
Published in Inorganic chemistry (07-12-2020)“…Metal cations are required for the proper function of a great amount of biological processes, as they are indispensable cofactors participating in up to 40% of…”
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Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca[sup.2+]/Ln[sup.3+] Competition
Published in International journal of molecular sciences (01-04-2023)“…Lanthanides, the 14 4f-block elements plus Lanthanum, have been extensively used to study the structure and biochemical properties of metalloproteins. The…”
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