Search Results - "Dierk Wanke"

The ABA-mediated switch between submersed and emersed life-styles in aquatic macrophytes by Wanke, Dierk

“…Hydrophytes comprise aquatic macrophytes from various taxa that are able to sustain and to complete their lifecycle in a flooded environment. Their ancestors,…”
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Elucidating the evolutionary conserved DNA-binding specificities of WRKY transcription factors by molecular dynamics and in vitro binding assays by Brand, Luise H, Fischer, Nina M, Harter, Klaus, Kohlbacher, Oliver, Wanke, Dierk

“…WRKY transcription factors constitute a large protein family in plants that is involved in the regulation of developmental processes and responses to biotic or…”
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AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses by Kilian, Joachim, Whitehead, Dion, Horak, Jakub, Wanke, Dierk, Weinl, Stefan, Batistic, Oliver, D'Angelo, Cecilia, Bornberg-Bauer, Erich, Kudla, Jörg, Harter, Klaus

“…The tolerance responses of plants to many abiotic stresses are conjectured to be controlled by complex gene networks. In the frame of the AtGenExpress project…”
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Transcriptome Analysis of High-Temperature Stress in Developing Barley Caryopses： Early Stress Responses and Effects on Storage Compound Biosynthesis by Mangelsen, Elke, Kilian, Joachim, Harter, Klaus, Jansson, Christer, Wanke, Dierk, Sundberg, Eva

“…High-temperature stress, like any abiotic stress, impairs the physiology and development of plants, including the stages of seed setting and ripening. We used…”
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The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs by Hecker, Andreas, Brand, Luise H., Peter, Sébastien, Simoncello, Nathalie, Kilian, Joachim, Harter, Klaus, Gaudin, Valérie, Wanke, Dierk

“…Polycomb-repressive complexes (PRCs) play key roles in development by repressing a large number of genes involved in various functions. Much, however, remains…”
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Role of BASIC PENTACYSTEINE transcription factors in a subset of cytokinin signaling responses by Shanks, Carly M., Hecker, Andreas, Cheng, Chia‐Yi, Brand, Luise, Collani, Silvio, Schmid, Markus, Schaller, G. Eric, Wanke, Dierk, Harter, Klaus, Kieber, Joseph J.

“…Summary Cytokinin plays diverse roles in plant growth and development, generally acting by modulating gene transcription in target tissues. The type‐B…”
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Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots by Mangelsen, Elke, Kilian, Joachim, Berendzen, Kenneth W, Kolukisaoglu, Uner H, Harter, Klaus, Jansson, Christer, Wanke, Dierk

“…WRKY proteins belong to the WRKY-GCM1 superfamily of zinc finger transcription factors that have been subject to a large plant-specific diversification. For…”
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Volatiles of two growth‐inhibiting rhizobacteria commonly engage AtWRKY18 function by Wenke, Katrin, Wanke, Dierk, Kilian, Joachim, Berendzen, Kenneth, Harter, Klaus, Piechulla, Birgit

“…Summary Interactions with the (a)biotic environment play key roles in a plant’s fitness and vitality. In addition to direct surface‐to‐surface contact,…”
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Phylogenetic Analyses and GAGA-Motif Binding Studies of BBR/BPC Proteins Lend to Clues in GAGA-Motif Recognition and a Regulatory Role in Brassinosteroid Signaling by Theune, Marius L, Bloss, Ulrich, Brand, Luise H, Ladwig, Friederike, Wanke, Dierk

“…Plant GAGA-motif binding factors are encoded by the BARLEY B RECOMBINANT / BASIC PENTACYSTEINE (BBR/BPC) family, which fulfill indispensable functions in…”
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DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro by Brand, Luise H, Kirchler, Tobias, Hummel, Sabine, Chaban, Christina, Wanke, Dierk

“…About 10% of all genes in eukaryote genomes are predicted to encode transcription factors. The specific binding of transcription factors to short DNA-motifs…”
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Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription by Berendzen, Kenneth W, Weiste, Christoph, Wanke, Dierk, Kilian, Joachim, Harter, Klaus, Dröge-Laser, Wolfgang

“…In higher plants, a diverse array of developmental and growth-related processes is regulated by the plant hormone auxin. Recent publications have proposed that…”
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TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors by Eichner, Johannes, Topf, Florian, Dräger, Andreas, Wrzodek, Clemens, Wanke, Dierk, Zell, Andreas

“…One of the key mechanisms of transcriptional control are the specific connections between transcription factors (TF) and cis-regulatory elements in gene…”
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Quantitative Analysis of Protein-DNA Interaction by qDPI-ELISA by Fischer, Stefan M, Böser, Alexander, Hirsch, Jan P, Wanke, Dierk

“…The specific binding of DNA-binding proteins to their cognate DNA motifs is a crucial step for gene expression control and chromatin organization in vivo. The…”
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Plant core environmental stress response genes are systemically coordinated during abiotic stresses by Hahn, Achim, Kilian, Joachim, Mohrholz, Anne, Ladwig, Friederike, Peschke, Florian, Dautel, Rebecca, Harter, Klaus, Berendzen, Kenneth W, Wanke, Dierk

“…Studying plant stress responses is an important issue in a world threatened by global warming. Unfortunately, comparative analyses are hampered by varying…”
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Alanine zipper-like coiled-coil domains are necessary for homotypic dimerization of plant GAGA-factors in the nucleus and nucleolus by Wanke, Dierk, Hohenstatt, Mareike L, Dynowski, Marek, Bloss, Ulrich, Hecker, Andreas, Elgass, Kirstin, Hummel, Sabine, Hahn, Achim, Caesar, Katharina, Schleifenbaum, Frank, Harter, Klaus, Berendzen, Kenneth W

“…GAGA-motif binding proteins control transcriptional activation or repression of homeotic genes. Interestingly, there are no sequence similarities between…”
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EDISA: extracting biclusters from multiple time-series of gene expression profiles by Supper, Jochen, Strauch, Martin, Wanke, Dierk, Harter, Klaus, Zell, Andreas

“…Cells dynamically adapt their gene expression patterns in response to various stimuli. This response is orchestrated into a number of gene expression modules…”
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Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA by Brand, Luise H, Henneges, Carsten, Schüssler, Axel, Kolukisaoglu, H Üner, Koch, Grit, Wallmeroth, Niklas, Hecker, Andreas, Thurow, Kerstin, Zell, Andreas, Harter, Klaus, Wanke, Dierk

“…DNA-binding proteins (DBPs), such as transcription factors, constitute about 10% of the protein-coding genes in eukaryotic genomes and play pivotal roles in…”
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Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves by Berendzen, Kenneth W, Stüber, Kurt, Harter, Klaus, Wanke, Dierk

“…The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational…”
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Predicting DNA-binding specificities of eukaryotic transcription factors by Schröder, Adrian, Eichner, Johannes, Supper, Jochen, Eichner, Jonas, Wanke, Dierk, Henneges, Carsten, Zell, Andreas

“…Today, annotated amino acid sequences of more and more transcription factors (TFs) are readily available. Quantitative information about their DNA-binding…”
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Family business: the multidrug-resistance related protein (MRP) ABC transporter genes in Arabidopsis thaliana by Kolukisaoglu, H. Üner, Bovet, Lucien, Klein, Markus, Eggmann, Thomas, Geisler, Markus, Wanke, Dierk, Martinoia, Enrico, Schulz, Burkhard

“…Despite the completion of the sequencing of the entire genome of Arabidopsis thaliana (L.) Heynh., the exact determination of each single gene and its function…”
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