Search Results - "Dickerson, Julie"

DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network by Mistry, Divya, Wise, Roger P, Dickerson, Julie A

“…Identification of central genes and proteins in biomolecular networks provides credible candidates for pathway analysis, functional analysis, and essentiality…”
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Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems by Liu, Ruolin, Loraine, Ann E, Dickerson, Julie A

“…Alternative Splicing (AS) as a post-transcription regulation mechanism is an important application of RNA-seq studies in eukaryotes. A number of software and…”
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Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq by Liu, Ruolin, Dickerson, Julie

“…We propose a novel method and software tool, Strawberry, for transcript reconstruction and quantification from RNA-Seq data under the guidance of genome…”
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Tissue-specific mouse mRNA isoform networks by Kandoi, Gaurav, Dickerson, Julie A.

“…Alternative Splicing produces multiple mRNA isoforms of genes which have important diverse roles such as regulation of gene expression, human heritable…”
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PLEXdb: gene expression resources for plants and plant pathogens by Dash, Sudhansu, Van Hemert, John, Hong, Lu, Wise, Roger P., Dickerson, Julie A.

“…PLEXdb (http://www.plexdb.org), in partnership with community databases, supports comparisons of gene expression across multiple plant and pathogen species,…”
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VitisNet: “Omics” Integration through Grapevine Molecular Networks by Grimplet, Jérôme, Cramer, Grant R, Dickerson, Julie A, Mathiason, Kathy, Van Hemert, John, Fennell, Anne Y

“…Background: Genomic data release for the grapevine has increased exponentially in the last five years. The Vitis vinifera genome has been sequenced and Vitis…”
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Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities by Fu, Yao, Jarboe, Laura R, Dickerson, Julie A

“…Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental…”
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A novel class dependent feature selection method for cancer biomarker discovery by Zhou, Wengang, Dickerson, Julie A

“…Abstract Identifying key biomarkers for different cancer types can improve diagnosis accuracy and treatment. Gene expression data can help differentiate…”
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Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences by Grimplet, Jérôme, Van Hemert, John, Carbonell-Bejerano, Pablo, Díaz-Riquelme, José, Dickerson, Julie, Fennell, Anne, Pezzotti, Mario, Martínez-Zapater, José M

“…The first draft assembly and gene prediction of the grapevine genome (8X base coverage) was made available to the scientific community in 2007, and functional…”
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Arabidopsis gene co-expression network and its functional modules by Mao, Linyong, Van Hemert, John L, Dash, Sudhansu, Dickerson, Julie A

“…Biological networks characterize the interactions of biomolecules at a systems-level. One important property of biological networks is the modular structure,…”
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Encystation of Entamoeba histolytica in Axenic Culture by Wesel, Jordan, Shuman, Jennifer, Bastuzel, Irem, Dickerson, Julie, Ingram-Smith, Cheryl

“…is a parasitic protozoan that causes amoebic dysentery, which affects approximately 90 million people each year worldwide. is transmitted through ingestion of…”
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Frequency and Severity of Acute Allergic-Like Reactions to Intravenously Administered Gadolinium-Based Contrast Media in Children by Forbes-Amrhein, Monica M, Dillman, Jonathan R, Trout, Andrew T, Koch, Bernadette L, Dickerson, Julie M, Giordano, Richard M, Towbin, Alexander J

“…OBJECTIVESThe purpose of this study is to determine the frequency and severity of acute allergic-like reactions to gadolinium-based contrast media (GBCM) in…”
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PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments by Bais, Preeti, Moon, Stephanie M, He, Kun, Leitao, Ricardo, Dreher, Kate, Walk, Tom, Sucaet, Yves, Barkan, Lenore, Wohlgemuth, Gert, Roth, Mary R, Wurtele, Eve Syrkin, Dixon, Philip, Fiehn, Oliver, Lange, B. Markus, Shulaev, Vladimir, Sumner, Lloyd W, Welti, Ruth, Nikolau, Basil J, Rhee, Seung Y, Dickerson, Julie A

“…PlantMetabolomics.org (PM) is a web portal and database for exploring, visualizing, and downloading plant metabolomics data. Widespread public access to…”
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Broadly Conserved Fungal Effector BEC1019 Suppresses Host Cell Death and Enhances Pathogen Virulence in Powdery Mildew of Barley (Hordeum vulgare L.) by Whigham, Ehren, Qi, Shan, Mistry, Divya, Surana, Priyanka, Xu, Ruo, Fuerst, Gregory, Pliego, Clara, Bindschedler, Laurence V, Spanu, Pietro D, Dickerson, Julie A, Innes, Roger W, Nettleton, Dan, Bogdanove, Adam J, Wise, Roger P

“…The interaction of barley, Hordeum vulgare L., with the powdery mildew fungus Blumeria graminis f. sp. hordei is a well-developed model to investigate…”
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OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data by Xia, Tian, Hemert, John V., Dickerson, Julie A.

“…OmicsAnalyzer is a Cytoscape plug-in for visual omics-based network analysis that (i) integrates hetero-omics data for one or more species; (ii) performs…”
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A New Resource for Cereal Genomics: 22K Barley GeneChip Comes of Age by Close, Timothy J., Steve I. Wanamaker, Caldo, Rico A., Stacy M. Turner, Ashlock, Daniel A., Julie A. Dickerson, Wing, Rod A., Gary J. Muehlbauer, Kleinhofs, Andris, Wise, Roger P.

“…In recent years, access to complete genomic sequences, coupled with rapidly accumulating data related to RNA and protein expression patterns, has made it…”
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Bioinformatics and Its Applications in Plant Biology by Rhee, S.Y, Dickerson, J, Xu, D

“…Bioinformatics plays an essential role in today's plant science. As the amount of data grows exponentially, there is a parallel growth in the demand for tools…”
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Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning by Sreekantan, Lekha, Mathiason, Kathy, Grimplet, Jérôme, Schlauch, Karen, Dickerson, Julie A, Fennell, Anne Y

“…Daylength is an important environmental cue for synchronizing growth, flowering, and dormancy with seasonality. As many floral development genes are…”
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Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage by Royce, Liam A, Boggess, Erin, Fu, Yao, Liu, Ping, Shanks, Jacqueline V, Dickerson, Julie, Jarboe, Laura R

“…Carboxylic acids are an attractive biorenewable chemical. Enormous progress has been made in engineering microbes for production of these compounds though…”
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Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function" by Quanbeck, Stephanie M, Brachova, Libuse, Campbell, Alexis A, Guan, Xin, Perera, Ann, He, Kun, Rhee, Seung Y, Bais, Preeti, Dickerson, Julie A, Dixon, Philip, Wohlgemuth, Gert, Fiehn, Oliver, Barkan, Lenore, Lange, Iris, Lange, B Markus, Lee, Insuk, Cortes, Diego, Salazar, Carolina, Shuman, Joel, Shulaev, Vladimir, Huhman, David V, Sumner, Lloyd W, Roth, Mary R, Welti, Ruth, Ilarslan, Hilal, Wurtele, Eve S, Nikolau, Basil J

“…Metabolomics is the methodology that identifies and measures global pools of small molecules (of less than about 1,000 Da) of a biological sample, which are…”
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