Search Results - "Diaz, Naryttza"
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TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Published in BMC bioinformatics (11-02-2009)“…Metagenomics, or the sequencing and analysis of collective genomes (metagenomes) of microorganisms isolated from an environment, promises direct access to the…”
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Phylogenetic classification of short environmental DNA fragments
Published in Nucleic acids research (01-04-2008)“…Metagenomics is providing striking insights into the ecology of microbial communities. The recently developed massively parallel 454 pyrosequencing technique…”
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Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing
Published in Journal of biotechnology (01-06-2009)“…The phylogenetic structure of the microbial community residing in a fermentation sample from a production-scale biogas plant fed with maize silage, green rye…”
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Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
Published in Journal of biotechnology (31-08-2008)“…A total community DNA sample from an agricultural biogas reactor continuously fed with maize silage, green rye, and small proportions of chicken manure has…”
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The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
Published in Journal of biotechnology (31-08-2008)“…Composition and gene content of a biogas-producing microbial community from a production-scale biogas plant fed with renewable primary products was analysed by…”
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Photoreceptors: Unconventional Ways of Seeing
Published in Current biology (11-01-2011)“…Animals perceive light typically by photoreceptor neurons assembled in eyes, but some also use non-eye photosensory neurons. Multidendritic neurons in the body…”
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Finding novel genes in bacterial communities isolated from the environment
Published in Bioinformatics (15-07-2006)“…Motivation: Novel sequencing techniques can give access to organisms that are difficult to cultivate using conventional methods. When applied to environmental…”
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Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification
Published in Bioinformatics (15-07-2008)“…Motivation: Modern high-throughput sequencing technologies enable the simultaneous analysis of organisms in an environment. The analysis of species diversity…”
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Assessment of transcript reconstruction methods for RNA-seq
Published in Nature methods (01-12-2013)“…The RGASP consortium compared 25 RNA-seq analysis programs in their ability to identify exons, reconstruct transcripts and quantify expression levels. Assembly…”
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