Search Results - "Dennis, Patrick"

Random heteropolymers preserve protein function in foreign environments by Panganiban, Brian, Qiao, Baofu, Jiang, Tao, DelRe, Christopher, Obadia, Mona M, Nguyen, Trung Dac, Smith, Anton A A, Hall, Aaron, Sit, Izaac, Crosby, Marquise G, Dennis, Patrick B, Drockenmuller, Eric, Olvera de la Cruz, Monica, Xu, Ting

“…The successful incorporation of active proteins into synthetic polymers could lead to a new class of materials with functions found only in living systems…”
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A novel, human Atg13 binding protein, Atg101, interacts with ULK1 and is essential for macroautophagy by Mercer, Carol A., Kaliappan, Alagammai, Dennis, Patrick B.

“…Macroautophagy is an intracellular, vesicle-mediated mechanism for the sequestration and ultimate lysosomal degradation of cytoplasmic proteins, organelles and…”
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AlphaFold2 models indicate that protein sequence determines both structure and dynamics by Guo, Hao-Bo, Perminov, Alexander, Bekele, Selemon, Kedziora, Gary, Farajollahi, Sanaz, Varaljay, Vanessa, Hinkle, Kevin, Molinero, Valeria, Meister, Konrad, Hung, Chia, Dennis, Patrick, Kelley-Loughnane, Nancy, Berry, Rajiv

“…AlphaFold 2 (AF2) has placed Molecular Biology in a new era where we can visualize, analyze and interpret the structures and functions of all proteins solely…”
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Iridescent biofilms of Cellulophaga lytica are tunable platforms for scalable, ordered materials by Sullivan, Claretta J., Brown, Kennedy, Hung, Chia-Suei, Tang, Joseph Kuo-Hsiang, DeSimone, Mark, Chen, Vincent, Lloyd, Pamela F., Gupta, Maneesh, Juhl, Abby, Crookes-Goodson, Wendy, Vasudev, Milana, Dennis, Patrick B., Kelley-Loughnane, Nancy

“…Nature offers many examples of materials which exhibit exceptional properties due to hierarchical assembly of their constituents. In well-studied…”
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Review physical and chemical aspects of stabilization of compounds in silk by Pritchard, Eleanor M, Dennis, Patrick B, Omenetto, Fiorenzo, Naik, Rajesh R, Kaplan, David L

“…The challenge of stabilization of small molecules and proteins has received considerable interest. The biological activity of small molecules can be lost as a…”
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AlphaFold2 modeling and molecular dynamics simulations of an intrinsically disordered protein by Guo, Hao-Bo, Huntington, Baxter, Perminov, Alexander, Smith, Kenya, Hastings, Nicholas, Dennis, Patrick, Kelley-Loughnane, Nancy, Berry, Rajiv

“…We use AlphaFold2 (AF2) to model the monomer and dimer structures of an intrinsically disordered protein (IDP), Nvjp-1, assisted by molecular dynamics (MD)…”
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C/D box sRNA-guided 2'-O-methylation patterns of archaeal rRNA molecules by Dennis, Patrick P, Tripp, Vanessa, Lui, Lauren, Lowe, Todd, Randau, Lennart

“…In archaea and eukaryotes, ribonucleoprotein complexes containing small C/D box s(no)RNAs use base pair complementarity to target specific sites within…”
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Molecular dynamics simulations explore effects of electric field orientations on spike proteins of SARS-CoV-2 virions by Kuang, Zhifeng, Luginsland, John, Thomas, Robert J., Dennis, Patrick B., Kelley-Loughnane, Nancy, Roach, William P., Naik, Rajesh R.

“…Emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its current worldwide spread have caused a pandemic of acute respiratory…”
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Medium-dependent control of the bacterial growth rate by Ehrenberg, Måns, Bremer, Hans, Dennis, Patrick P.

“…By combining results from previous studies of nutritional up-shifts we here re-investigate how bacteria adapt to different nutritional environments by…”
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Free RNA polymerase in Escherichia coli by Patrick, Michael, Dennis, Patrick P., Ehrenberg, Mans, Bremer, Hans

“…The frequencies of transcription initiation of regulated and constitutive genes depend on the concentration of free RNA polymerase holoenzyme [Rf] near their…”
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Gamma estimator of Jarzynski equality for recovering binding energies from noisy dynamic data sets by Kuang, Zhifeng, Singh, Kristi M., Oliver, Daniel J., Dennis, Patrick B., Perry, Carole C., Naik, Rajesh R.

“…A fundamental problem in thermodynamics is the recovery of macroscopic equilibrated interaction energies from experimentally measured single-molecular…”
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Creation of energetic biothermite inks using ferritin liquid protein by Slocik, Joseph M., McKenzie, Ruel, Dennis, Patrick B., Naik, Rajesh R.

“…Energetic liquids function mainly as fuels due to low energy densities and slow combustion kinetics. Consequently, these properties can be significantly…”
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Who Blinks in Volatile Markets, Individuals or Institutions? by Dennis, Patrick J., Strickland, Deon

“…We investigate the relationship between the ownership structure and returns of firms on days when the absolute value of the market's return is two percent or…”
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VO2peak prior to transplant differentiates survival post kidney transplant by Chakkera, Harini A., Kaplan, Bruce, Budhiraja, Pooja, Behmen, Senaida, Fitz‐Patrick, Dennis, Butterfield, Richard J.

“…The OPTN/UNOS utilizes the calculated estimated posttransplant survival (EPTS) score as the measure of post‐kidney transplant survival to guide allocation of…”
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Influence of Glassy Carbon Surface Finishing on Its Wear Behavior during Precision Glass Moulding of Fused Silica by Grunwald, Tim, Wilhelm, Dennis Patrick, Dambon, Olaf, Bergs, Thomas

“…Laser technology has a rising demand for high precision Fused Silica components. Precision Glass Moulding (PGM) is a technology that can fulfil the given…”
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Accurate prediction by AlphaFold2 for ligand binding in a reductive dehalogenase and implications for PFAS (per- and polyfluoroalkyl substance) biodegradation by Guo, Hao-Bo, Varaljay, Vanessa A., Kedziora, Gary, Taylor, Kimberly, Farajollahi, Sanaz, Lombardo, Nina, Harper, Eric, Hung, Chia, Gross, Marie, Perminov, Alexander, Dennis, Patrick, Kelley-Loughnane, Nancy, Berry, Rajiv

“…Despite the success of AlphaFold2 (AF2), it is unclear how AF2 models accommodate for ligand binding. Here, we start with a protein sequence from…”
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Programmable Mechanical Properties from a Worm Jaw-Derived Biopolymer through Hierarchical Ion Exposure by Gupta, Maneesh K, Becknell, Kellie A, Crosby, Marquise G, Bedford, Nicholas M, Wright, Joshua, Dennis, Patrick B, Naik, Rajesh R

“…Mechanisms of biomaterial sclerotization in natural systems promise new insights into how the mechanical properties of engineered materials may be dynamically…”
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Thermodynamic Modeling of Variations in the Rate of RNA Chain Elongation of E. coli rrn Operons by Fange, David, Mellenius, Harriet, Dennis, Patrick P., Ehrenberg, Måns

“…Previous electron-microscopic imaging has shown high RNA polymerase occupation densities in the 16S and 23S encoding regions and low occupation densities in…”
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VO 2peak prior to transplant differentiates survival post kidney transplant by Chakkera, Harini A, Kaplan, Bruce, Budhiraja, Pooja, Behmen, Senaida, Fitz-Patrick, Dennis, Butterfield, Richard J

“…The OPTN/UNOS utilizes the calculated estimated posttransplant survival (EPTS) score as the measure of post-kidney transplant survival to guide allocation of…”
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Biological versus electronic adaptive coloration: how can one inform the other? by Kreit, Eric, Mäthger, Lydia M., Hanlon, Roger T., Dennis, Patrick B., Naik, Rajesh R., Forsythe, Eric, Heikenfeld, Jason

“…Adaptive reflective surfaces have been a challenge for both electronic paper (e-paper) and biological organisms. Multiple colours, contrast, polarization,…”
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