Search Results - "Decker, Jared"

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    Powerful detection of polygenic selection and evidence of environmental adaptation in US beef cattle by Rowan, Troy N, Durbin, Harly J, Seabury, Christopher M, Schnabel, Robert D, Decker, Jared E

    Published in PLoS genetics (22-07-2021)
    “…Selection on complex traits can rapidly drive evolution, especially in stressful environments. This polygenic selection does not leave intense sweep signatures…”
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    Agricultural Genomics: Commercial Applications Bring Increased Basic Research Power by Decker, Jared E

    Published in PLoS genetics (01-11-2015)
    “…  Genomic prediction, whether using the estimated effects of variants merged with independently estimated merits based on phenotype and pedigree (multi-step)…”
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    Genome-wide association analyses identify genotype-by-environment interactions of growth traits in Simmental cattle by Braz, Camila U., Rowan, Troy N., Schnabel, Robert D., Decker, Jared E.

    Published in Scientific reports (25-06-2021)
    “…Understanding genotype-by-environment interactions (G × E) is crucial to understand environmental adaptation in mammals and improve the sustainability of…”
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    Genome-wide association and genotype by environment interactions for growth traits in U.S. Red Angus cattle by Smith, Johanna L, Wilson, Miranda L, Nilson, Sara M, Rowan, Troy N, Schnabel, Robert D, Decker, Jared E, Seabury, Christopher M

    Published in BMC genomics (16-07-2022)
    “…Abstract Background Genotypic information produced from single nucleotide polymorphism (SNP) arrays has routinely been used to identify genomic regions…”
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    New World cattle show ancestry from multiple independent domestication events by McTavish, Emily Jane, Decker, Jared E, Schnabel, Robert D, Taylor, Jeremy F, Hillis, David M

    “…Previous archeological and genetic research has shown that modern cattle breeds are descended from multiple independent domestication events of the wild…”
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    Feralization: Confronting the Complexity of Domestication and Evolution by Mabry, Makenzie E., Rowan, Troy N., Pires, J. Chris, Decker, Jared E.

    Published in Trends in genetics (01-04-2021)
    “…Feral populations, those which successfully persist outside of cultivation or husbandry, provide unique opportunities to study the genomic impacts of…”
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    Uncovering the architecture of selection in two Bos taurus cattle breeds by Rowan, Troy N., Schnabel, Robert D., Decker, Jared E.

    Published in Evolutionary applications (01-02-2024)
    “…Directional selection alters the genome via hard sweeps, soft sweeps, and polygenic selection. However, mapping polygenic selection is difficult because it…”
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    Candidate lethal haplotypes and causal mutations in Angus cattle by Hoff, Jesse L, Decker, Jared E, Schnabel, Robert D, Taylor, Jeremy F

    Published in BMC genomics (18-10-2017)
    “…If unmanaged, high rates of inbreeding in livestock populations adversely impact their reproductive fitness. In beef cattle, historical selection strategies…”
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    Genetic ancestry, admixture, and population structure in rural Dominica by Keith, Monica H, Flinn, Mark V, Durbin, Harly J, Rowan, Troy N, Blomquist, Gregory E, Taylor, Kristen H, Taylor, Jeremy F, Decker, Jared E

    Published in PloS one (03-11-2021)
    “…The Caribbean is a genetically diverse region with heterogeneous admixture compositions influenced by local island ecologies, migrations, colonial conflicts,…”
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    Genome-wide association and genotype by environment interactions for growth traits in U.S. Gelbvieh cattle by Smith, Johanna L, Wilson, Miranda L, Nilson, Sara M, Rowan, Troy N, Oldeschulte, David L, Schnabel, Robert D, Decker, Jared E, Seabury, Christopher M

    Published in BMC genomics (04-12-2019)
    “…Single nucleotide polymorphism (SNP) arrays have facilitated discovery of genetic markers associated with complex traits in domestic cattle; thereby enabling…”
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    CRUMBLER: A tool for the prediction of ancestry in cattle by Crum, Tamar E, Schnabel, Robert D, Decker, Jared E, Regitano, Luciana C A, Taylor, Jeremy F

    Published in PloS one (26-08-2019)
    “…In many beef and some dairy production systems, crossbreeding is used to take advantage of breed complementarity and heterosis. Admixed animals are frequently…”
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    Detection of selective sweeps in cattle using genome-wide SNP data by Ramey, Holly R, Decker, Jared E, McKay, Stephanie D, Rolf, Megan M, Schnabel, Robert D, Taylor, Jeremy F

    Published in BMC genomics (07-06-2013)
    “…The domestication and subsequent selection by humans to create breeds and biological types of cattle undoubtedly altered the patterning of variation within…”
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    High-Throughput and Accurate 3D Scanning of Cattle Using Time-of-Flight Sensors and Deep Learning by Omotara, Gbenga, Tousi, Seyed Mohamad Ali, Decker, Jared, Brake, Derek, DeSouza, G N

    Published in Sensors (Basel, Switzerland) (14-08-2024)
    “…We introduce a high-throughput 3D scanning system designed to accurately measure cattle phenotypes. This scanner employs an array of depth sensors, i.e.,…”
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    A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle by Rowan, Troy N, Hoff, Jesse L, Crum, Tamar E, Taylor, Jeremy F, Schnabel, Robert D, Decker, Jared E

    Published in Genetics selection evolution (Paris) (26-12-2019)
    “…During the last decade, the use of common-variant array-based single nucleotide polymorphism (SNP) genotyping in the beef and dairy industries has produced an…”
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