Search Results - "DeBoy, Robert"

Effect of mupirocin for Staphylococcus aureus decolonization on the microbiome of the nose and throat in community and nursing home dwelling adults by Roghmann, Mary-Claire, Lydecker, Alison D, Shardell, Michelle, DeBoy, Robert T, Johnson, J Kristie, Zhao, LiCheng, Hittle, Lauren L, Mongodin, Emmanuel F

“…To characterize the microbial communities of the anterior nares (nose) and posterior pharynx (throat) of adults dwelling in the community and in nursing homes…”
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Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice by Fouts, Derrick E, Tyler, Heather L, DeBoy, Robert T, Daugherty, Sean, Ren, Qinghu, Badger, Jonathan H, Durkin, Anthony S, Huot, Heather, Shrivastava, Susmita, Kothari, Sagar, Dodson, Robert J, Mohamoud, Yasmin, Khouri, Hoda, Roesch, Luiz F W, Krogfelt, Karen A, Struve, Carsten, Triplett, Eric W, Methé, Barbara A

“…We report here the sequencing and analysis of the genome of the nitrogen-fixing endophyte, Klebsiella pneumoniae 342. Although K. pneumoniae 342 is a member of…”
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Metagenomic Analysis of the Human Distal Gut Microbiome by Gill, Steven R, Pop, Mihai, DeBoy, Robert T, Eckburg, Paul B, Turnbaugh, Peter J, Samuel, Buck S, Gordon, Jeffrey I, Relman, David A, Fraser-Liggett, Claire M, Nelson, Karen E

“…The human intestinal microbiota is composed of 10¹³ to 10¹⁴ microorganisms whose collective genome ("microbiome") contains at least 100 times as many genes as…”
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Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1 by Mongodin, Emmanuel F, Shapir, Nir, Daugherty, Sean C, DeBoy, Robert T, Emerson, Joanne B, Shvartzbeyn, Alla, Radune, Diana, Vamathevan, Jessica, Riggs, Florenta, Grinberg, Viktoria, Khouri, Hoda, Wackett, Lawrence P, Nelson, Karen E, Sadowsky, Michael J

“…Arthrobacter sp. strains are among the most frequently isolated, indigenous, aerobic bacterial genera found in soils. Member of the genus are metabolically and…”
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Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species by Fouts, Derrick E, Mongodin, Emmanuel F, Mandrell, Robert E, Miller, William G, Rasko, David A, Ravel, Jacques, Brinkac, Lauren M, DeBoy, Robert T, Parker, Craig T, Daugherty, Sean C, Dodson, Robert J, Durkin, A. Scott, Madupu, Ramana, Sullivan, Steven A, Shetty, Jyoti U, Ayodeji, Mobolanle A, Shvartsbeyn, Alla, Schatz, Michael C, Badger, Jonathan H, Fraser, Claire M, Nelson, Karen E

“…The genome of C. jejuni RM1221 is a single circular chromosome, 1,777,831 bp in length, with an average G+C content of 30.31%. There are a total of 1,884…”
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On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales by Zhaxybayeva, Olga, Swithers, Kristen S, Lapierre, Pascal, Fournier, Gregory P, Bickhart, Derek M, DeBoy, Robert T, Nelson, Karen E, Nesbø, Camilla L, Doolittle, W. Ford, Gogarten, J. Peter, Noll, Kenneth M

“…Since publication of the first Thermotogales genome, Thermotoga maritima strain MSB8, single- and multi-gene analyses have disagreed on the phylogenetic…”
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Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus by DEBOY, Robert T, MONGODIN, Emmanuel F, NELSON, Karen E, FOUTS, Derrick E, TAILFORD, Louise E, KHOURI, Hoda, EMERSON, Joanne B, MOHAMOUD, Yasmin, WATKINS, Kisha, HENRISSAT, Bernard, GILBERT, Harry J

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Genome Degradation in Brucella ovis Corresponds with Narrowing of Its Host Range and Tissue Tropism by Tsolis, Renee M, Seshadri, Rekha, Santos, Renato L, Sangari, Felix J, Lobo, Juan M. García, De Jong, Maarten F, Ren, Qinghu, Myers, Garry, Brinkac, Lauren M, Nelson, William C, DeBoy, Robert T, Angiuoli, Samuel, Khouri, Hoda, Dimitrov, George, Robinson, Jeffrey R, Mulligan, Stephanie

“…Brucella ovis is a veterinary pathogen associated with epididymitis in sheep. Despite its genetic similarity to the zoonotic pathogens B. abortus, B…”
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Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain by GILL, Steven R, FOUTS, Derrick E, DODSON, Robert J, DAUGHERTY, Sean C, MADUPU, Ramana, ANGIUOLI, Samuel V, DURKIN, A. Scott, HAFT, Daniel H, VAMATHEVAN, Jessica, KHOURI, Hoda, UTTERBACK, Terry, LEE, Chris, ARCHER, Gordon L, DIMITROV, George, LINGXIA JIANG, HAIYING QIN, JAN WEIDMAN, TRAN, Kevin, KANG, Kathy, HANCE, Ioana R, NELSON, Karen E, FRASER, Claire M, MONGODIN, Emmanuel F, DEBOY, Robert T, RAVEL, Jacques, PAULSEN, Ian T, KOLONAY, James F, BRINKAC, Lauren, BEANAN, Mauren

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Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens by Risso, Carla, Sun, Jun, Zhuang, Kai, Mahadevan, Radhakrishnan, DeBoy, Robert, Ismail, Wael, Shrivastava, Susmita, Huot, Heather, Kothari, Sagar, Daugherty, Sean, Bui, Olivia, Schilling, Christophe H, Lovley, Derek R, Methé, Barbara A

“…Rhodoferax ferrireducens is a metabolically versatile, Fe(III)-reducing, subsurface microorganism that is likely to play an important role in the carbon and…”
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Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5 by Paulsen, I.T, Press, C.M, Ravel, J, Kobayashi, D.Y, Myers, G.S.A, Mavrodi, D.V, DeBoy, R.T, Seshadri, R, Ren, Q, Madupu, R

“…Pseudomonas fluorescens Pf-5 is a plant commensal bacterium that inhabits the rhizosphere and produces secondary metabolites that suppress soilborne plant…”
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The Psychrophilic Lifestyle as Revealed by the Genome Sequence of Colwellia psychrerythraea 34H through Genomic and Proteomic Analyses by Methé, Barbara A., Nelson, Karen E., Deming, Jody W., Momen, Bahram, Melamud, Eugene, Zhang, Xijun, Moult, John, Madupu, Ramana, Nelson, William C., Dodson, Robert J., Brinkac, Lauren M., Daugherty, Sean C., Durkin, Anthony S., DeBoy, Robert T., Kolonay, James F., Sullivan, Steven A., Zhou, Liwei, Davidsen, Tanja M., Wu, Martin, Huston, Adrienne L., Lewis, Matthew, Weaver, Bruce, Weidman, Janice F., Khouri, Hoda, Utterback, Terry R., Feldblyum, Tamara V., Fraser, Claire M.

“…The completion of the 5,373,180-bp genome sequence of the marine psychrophilic bacterium Colwellia psychrerythraea 34H, a model for the study of life in…”
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Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath) by Ward, Naomi, Larsen, Øivind, Sakwa, James, Bruseth, Live, Khouri, Hoda, Durkin, A Scott, Dimitrov, George, Jiang, Lingxia, Scanlan, David, Kang, Katherine H, Lewis, Matt, Nelson, Karen E, Methé, Barbara, Wu, Martin, Heidelberg, John F, Paulsen, Ian T, Fouts, Derrick, Ravel, Jacques, Tettelin, Hervé, Ren, Qinghu, Read, Tim, DeBoy, Robert T, Seshadri, Rekha, Salzberg, Steven L, Jensen, Harald B, Birkeland, Nils Kåre, Nelson, William C, Dodson, Robert J, Grindhaug, Svenn H, Holt, Ingeborg, Eidhammer, Ingvar, Jonasen, Inge, Vanaken, Susan, Utterback, Terry, Feldblyum, Tamara V, Fraser, Claire M, Lillehaug, Johan R, Eisen, Jonathan A

“…Methanotrophs are ubiquitous bacteria that can use the greenhouse gas methane as a sole carbon and energy source for growth, thus playing major roles in global…”
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Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens by Myers, Garry S A, Rasko, David A, Cheung, Jackie K, Ravel, Jacques, Seshadri, Rekha, DeBoy, Robert T, Ren, Qinghu, Varga, John, Awad, Milena M, Brinkac, Lauren M, Daugherty, Sean C, Haft, Daniel H, Dodson, Robert J, Madupu, Ramana, Nelson, William C, Rosovitz, M J, Sullivan, Steven A, Khouri, Hoda, Dimitrov, George I, Watkins, Kisha L, Mulligan, Stephanie, Benton, Jonathan, Radune, Diana, Fisher, Derek J, Atkins, Helen S, Hiscox, Tom, Jost, B Helen, Billington, Stephen J, Songer, J Glenn, McClane, Bruce A, Titball, Richard W, Rood, Julian I, Melville, Stephen B, Paulsen, Ian T

“…Clostridium perfringens is a Gram-positive, anaerobic spore-forming bacterium commonly found in soil, sediments, and the human gastrointestinal tract. C…”
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Genome sequence of the deltaproteobacterial strain NaphS2 and analysis of differential gene expression during anaerobic growth on naphthalene by DiDonato, Jr, Raymond J, Young, Nelson D, Butler, Jessica E, Chin, Kuk-Jeong, Hixson, Kim K, Mouser, Paula, Lipton, Mary S, DeBoy, Robert, Methé, Barbara A

“…Anaerobic polycyclic hydrocarbon (PAH) degradation coupled to sulfate reduction may be an important mechanism for in situ remediation of contaminated…”
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Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes by Seshadri, Rekha, Adrian, Lorenz, Fouts, Derrick E, Eisen, Jonathan A, Phillippy, Adam M, Methe, Barbara A, Ward, Naomi L, Nelson, William C, Deboy, Robert T, Khouri, Hoda M, Kolonay, James F, Dodson, Robert J, Daugherty, Sean C, Brinkac, Lauren M, Sullivan, Steven A, Madupu, Ramana, Nelson, Karen E, Kang, Katherine H, Impraim, Marjorie, Tran, Kevin, Robinson, Jeffrey M, Forberger, Heather A, Fraser, Claire M, Zinder, Stephen H, Heidelberg, John F

“…Dehalococcoides ethenogenes is the only bacterium known to reductively dechlorinate the groundwater pollutants, tetrachloroethene (PCE) and trichloroethene, to…”
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Comparison of the Microbiota of Older Adults Living in Nursing Homes and the Community by Roghmann, Mary-Claire, Lydecker, Alison D, Hittle, Lauren, DeBoy, Robert T, Nowak, Rebecca G, Johnson, J Kristie, Mongodin, Emmanuel F

“…Our objective for this study was to characterize the microbial communities of the anterior nares (nose), posterior pharynx (throat), and skin of the femoral…”
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Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species by Nelson, K.E, Fouts, D.E, Mongodin, E.F, Ravel, J, DeBoy, R.T, Kolonay, J.F, Rasko, D.A, Angiuoli, S.V, Gill, S.R, Paulsen, I.T, Wonderling, L.D, Uhlich, G.A, Bayles, D.O, Luchansky, J.B

“…The genomes of three strains of Listeria monocytogenes that have been associated with food-borne illness in the USA were subjected to whole genome comparative…”
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Whole-Genome Sequence Analysis of Pseudomonas syringae pv. phaseolicola 1448A Reveals Divergence among Pathovars in Genes Involved in Virulence and Transposition by JOARDAR, Vinita, LINDEBERG, Magdalen, MADUPU, Ramana, NELSON, William C, ROSOVITZ, M. J, SULLIVAN, Steven, CRABTREE, Jonathan, CREASY, Todd, DAVIDSEN, Tanja, HAFT, Dan H, ZAFAR, Nikhat, LIWEI ZHOU, JACKSON, Robert W, HALPIN, Rebecca, HOLLEY, Tara, KHOURI, Hoda, FELDBLYUM, Tamara, WHITE, Owen, FRASER, Claire M, CHATTERJEE, Arun K, CARTINHOUR, Sam, SCHNEIDER, David J, MANSFIELD, John, SELENGUT, Jeremy, COLLMER, Alan, BUELL, C. Robin, DODSON, Robert, BRINKAC, Lauren M, DAUGHERTY, Sean C, DEBOY, Robert, DURKIN, A. Scott, GIGLIO, Michelle Gwinn

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Complete Genome Sequence of the Q-Fever Pathogen Coxiella burnetii by Seshadri, Rekha, Paulsen, Ian T., Eisen, Jonathan A., Read, Timothy D., Nelson, Karen E., Nelson, William C., Ward, Naomi L., Tettelin, Hervé, Davidsen, Tanja M., Beanan, Maureen J., Deboy, Robert T., Daugherty, Sean C., Brinkac, Lauren M., Madupu, Ramana, Dodson, Robert J., Khouri, Hoda M., Lee, Kathy H., Carty, Heather A., Scanlan, David, Heinzen, Robert A., Thompson, Herbert A., Samuel, James E., Fraser, Claire M., Heidelberg, John F.

“…The 1,995,275-bp genome of Coxiella burnetii, Nine Mile phase I RSA493, a highly virulent zoonotic pathogen and category B bioterrorism agent, was sequenced by…”
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