Search Results - "De Rosa, M J"

Direct Detection of Black Carbon in Soils by Py‐GC/MS, Carbon‐13 NMR Spectroscopy and Thermogravimetric Techniques by De la Rosa, J. M., Knicker, H., López-Capel, E., Manning, D. A. C., González-Perez, J. A., González-Vila, F. J.

“…The amount and compositional characteristics of black carbon in soils (mollisol and vertisol), charred biomass (laboratory produced; rice, chestnut), and soils…”
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Design of a uniform irradiance source based on light emitting diodes by Rojas Villafañe, E, Valor, A, de la Rosa, JM, Fabila-Bustos, D, Stolik, S

“…Many applications in various fields require uniform illumination from light sources, for example, in medical imaging in the biophotonics area. In this work,…”
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A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs by Abrishami, V, Zaldívar-Peraza, A, de la Rosa-Trevín, J M, Vargas, J, Otón, J, Marabini, R, Shkolnisky, Y, Carazo, J M, Sorzano, C O S

“…Structural information of macromolecular complexes provides key insights into the way they carry out their biological functions. Achieving high-resolution…”
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A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy by Conesa, P., Gómez-Blanco, J., Marabini, R., Carazo, J. M., del Caño, L., Melero, R., Kazemi, M., Vilas, J. L., de la Rosa-Trevín, J. M., Otón, J., Vargas, Javier, Sorzano, Carlos Oscar S., Cuenca, J.

“…One of the key steps in Electron Microscopy is the tomographic reconstruction of a three-dimensional (3D) map of the specimen being studied from a set of…”
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Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy by de la Rosa-Trevín, J.M., Quintana, A., del Cano, L., Zaldívar, A., Foche, I., Gutiérrez, J., Gómez-Blanco, J., Burguet-Castell, J., Cuenca-Alba, J., Abrishami, V., Vargas, J., Otón, J., Sharov, G., Vilas, J.L., Navas, J., Conesa, P., Kazemi, M., Marabini, R., Sorzano, C.O.S., Carazo, J.M.

“…In the past few years, 3D electron microscopy (3DEM) has undergone a revolution in instrumentation and methodology. One of the central players in this…”
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Early morning fluctuations in trunk diameter are highly sensitive to water stress in nectarine trees by De la Rosa, J. M, I. C. Dodd, R. Domingo, A. Pérez-Pastor

“…The sensitivity to water stress of different plant water status indicators was evaluated during two consecutive years in early nectarine trees grown in a…”
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A new algorithm for high-resolution reconstruction of single particles by electron microscopy by Sorzano, C.O.S., Vargas, J., de la Rosa-Trevín, J.M., Jiménez, A., Maluenda, D., Melero, R., Martínez, M., Ramírez-Aportela, E., Conesa, P., Vilas, J.L., Marabini, R., Carazo, J.M.

“…The Map Challenge organized by the Electron Microscopy Data Bank has prompted the development of an Xmipp high resolution reconstruction protocol (which we…”
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Using Scipion for stream image processing at Cryo-EM facilities by Gómez-Blanco, J., de la Rosa-Trevín, J.M., Marabini, R., del Cano, L., Jiménez, A., Martínez, M., Melero, R., Majtner, T., Maluenda, D., Mota, J., Rancel, Y., Ramírez-Aportela, E, Vilas, J.L., Carroni, M., Fleischmann, S., Lindahl, E., Ashton, A.W., Basham, M., Clare, D.K., Savage, K., Siebert, C.A., Sharov, G.G., Sorzano, C.O.S., Conesa, P., Carazo, J.M.

“…Three dimensional electron microscopy is becoming a very data-intensive field in which vast amounts of experimental images are acquired at high speed. To…”
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Xmipp 3.0: An improved software suite for image processing in electron microscopy by de la Rosa-Trevín, J.M., Otón, J., Marabini, R., Zaldívar, A., Vargas, J., Carazo, J.M., Sorzano, C.O.S.

“…Xmipp is a specialized software package for image processing in electron microscopy, and that is mainly focused on 3D reconstruction of macromolecules through…”
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A review of resolution measures and related aspects in 3D Electron Microscopy by Sorzano, C.O.S., Vargas, J., Otón, J., Abrishami, V., de la Rosa-Trevín, J.M., Gómez-Blanco, J., Vilas, J.L., Marabini, R., Carazo, J.M.

“…Fourier Shell Correlation, Spectral Signal-to-Noise Ratio, Fourier Neighbour Correlation, and Differential Phase Residual are different measures that have been…”
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Sequential Processes to Produce N-TiO2 Films Through Rf Plasmas by Valencia-Alvarado, R, A de la Piedad-Beneitez, López-Callejas, R, Rodríguez-Méndez, B G, Mercado-Cabrera, A, Peña-Eguiluz, R, Muñoz-Castro, A E, J M de la Rosa-Vázquez

“…Using as target a CpTi disk in an atmosphere of argon/oxygen and by rf plasma. First titanium dioxide (TiO2) films were obtained on silicon substrates, and…”
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Blind estimation of DED camera gain in Electron Microscopy by Sorzano, C.O.S., Fernández-Giménez, E., Peredo-Robinson, V., Vargas, J., Majtner, T., Caffarena, G., Otón, J., Vilas, J.L., de la Rosa-Trevín, J.M., Melero, R., Gómez-Blanco, J., Cuenca, J., del Cano, L., Conesa, P., Marabini, R., Carazo, J.M.

“…The introduction of Direct Electron Detector (DED) videos in the Electron Microscope field has boosted Single Particle Analysis to a point in which it is…”
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Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques by Vargas, J, Abrishami, V, Marabini, R, de la Rosa-Trevín, J M, Zaldivar, A, Carazo, J M, Sorzano, C O S

“…Three-dimensional reconstruction of biological specimens using electron microscopy by single particle methodologies requires the identification and extraction…”
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A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy by Sorzano, C.O.S., Vargas, J., de la Rosa-Trevín, J.M., Otón, J., Álvarez-Cabrera, A.L., Abrishami, V., Sesmero, E., Marabini, R., Carazo, J.M.

“…Cryo Electron Microscopy is a powerful Structural Biology technique, allowing the elucidation of the three-dimensional structure of biological macromolecules…”
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Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited by Sorzano, C. O. S., Alcorlo, M., de la Rosa-Trevín, J. M., Melero, R., Foche, I., Zaldívar-Peraza, A., del Cano, L., Vargas, J., Abrishami, V., Otón, J., Marabini, R., Carazo, J. M.

“…Cryo-Electron Microscopy (cryo-EM) of macromolecular complexes is a fundamental structural biology technique which is expanding at a very fast pace. Key to its…”
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Impact of future scenarios of climate change on lignin dynamics in soil: A case study in a Mediterranean savannah by San-Emeterio, L.M., Hidalgo-Galvez, M.D., de la Rosa, J.M., Pérez-Ramos, I., González-Pérez, J.A.

“…Lignin is an abundant and recalcitrant biopolymer of major relevance as soil organic matter (SOM) component playing a significant role in its stabilization. In…”
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FASTDEF: Fast defocus and astigmatism estimation for high-throughput transmission electron microscopy by Vargas, J., Otón, J., Marabini, R., Jonic, S., de la Rosa-Trevín, J.M., Carazo, J.M., Sorzano, C.O.S.

“…In this work we present a fast and automated algorithm for estimating the contrast transfer function (CTF) of a transmission electron microscope. The approach…”
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Can straw-biochar mulching mitigate erosion of wildfire-degraded soils under extreme rainfall? by Prats, S.A., Merino, A., Gonzalez-Perez, J.A., Verheijen, F.G.A., De la Rosa, J.M.

“…High severity wildfires cause a drastic alteration of soil carbon cycling – both oxidising and thermally altering soil organic matter (SOM) - and usually are…”
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Fast and automatic identification of particle tilt pairs based on Delaunay triangulation by Vilas, J.L., Navas, J., Gómez-Blanco, J., de la Rosa-Trevín, J.M., Melero, R., Peschiera, I., Ferlenghi, I., Cuenca, J., Marabini, R., Carazo, J.M., Vargas, J., Sorzano, C.O.S.

“…Random conical tilt (RCT) and orthogonal tilt reconstruction (OTR) are two remarkable methods for reconstructing the three-dimensional structure of…”
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Local analysis of strains and rotations for macromolecular electron microscopy maps by Sorzano, C.O.S., Martín-Ramos, A., Prieto, F., Melero, R., Martín-Benito, J., Jonic, S., Navas-Calvente, J., Vargas, J., Otón, J., Abrishami, V., de la Rosa-Trevín, J.M., Gómez-Blanco, J., Vilas, J.L., Marabini, R., Carazo, J.M.

“…Macromolecular complexes perform their physiological functions by local rearrangements of their constituents and biochemically interacting with their reaction…”
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