Search Results - "De Pons, Jeffrey L"

The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform by Smith, Jennifer R, Hayman, G Thomas, Wang, Shur-Jen, Laulederkind, Stanley J F, Hoffman, Matthew J, Kaldunski, Mary L, Tutaj, Monika, Thota, Jyothi, Nalabolu, Harika S, Ellanki, Santoshi L R, Tutaj, Marek A, De Pons, Jeffrey L, Kwitek, Anne E, Dwinell, Melinda R, Shimoyama, Mary E

“…Abstract Formed in late 1999, the Rat Genome Database (RGD, https://rgd.mcw.edu) will be 20 in 2020, the Year of the Rat. Because the laboratory rat, Rattus…”
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2022 updates to the Rat Genome Database: a Findable, Accessible, Interoperable, and Reusable (FAIR) resource by Vedi, Mahima, Smith, Jennifer R, Thomas Hayman, G, Tutaj, Monika, Brodie, Kent C, De Pons, Jeffrey L, Demos, Wendy M, Gibson, Adam C, Kaldunski, Mary L, Lamers, Logan, Laulederkind, Stanley J F, Thota, Jyothi, Thorat, Ketaki, Tutaj, Marek A, Wang, Shur-Jen, Zacher, Stacy, Dwinell, Melinda R, Kwitek, Anne E

“…Abstract The Rat Genome Database (RGD, https://rgd.mcw.edu) has evolved from simply a resource for rat genetic markers, maps, and genes, by adding multiple…”
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Rare disease research resources at the Rat Genome Database by Kaldunski, Mary L, Smith, Jennifer R, Brodie, Kent C, De Pons, Jeffrey L, Demos, Wendy M, Gibson, Adam C, Hayman, G Thomas, Lamers, Logan, Laulederkind, Stanley J F, Thorat, Ketaki, Thota, Jyothi, Tutaj, Marek A, Tutaj, Monika, Vedi, Mahima, Wang, Shur-Jen, Zacher, Stacy, Dwinell, Melinda R, Kwitek, Anne E

“…Abstract Rare diseases individually affect relatively few people, but as a group they impact considerable numbers of people. The Rat Genome Database…”
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MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses by Vedi, Mahima, Nalabolu, Harika S, Lin, Chien-Wei, Hoffman, Matthew J, Smith, Jennifer R, Brodie, Kent, De Pons, Jeffrey L, Demos, Wendy M, Gibson, Adam C, Hayman, G Thomas, Hill, Morgan L, Kaldunski, Mary L, Lamers, Logan, Laulederkind, Stanley J F, Thorat, Ketaki, Thota, Jyothi, Tutaj, Monika, Tutaj, Marek A, Wang, Shur-Jen, Zacher, Stacy, Dwinell, Melinda R, Kwitek, Anne E

“…Abstract Biological interpretation of a large amount of gene or protein data is complex. Ontology analysis tools are imperative in finding functional…”
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Ontological Analysis of Coronavirus Associated Human Genes at the COVID-19 Disease Portal by Wang, Shur-Jen, Brodie, Kent C, De Pons, Jeffrey L, Demos, Wendy M, Gibson, Adam C, Hayman, G Thomas, Hill, Morgan L, Kaldunski, Mary L, Lamers, Logan, Laulederkind, Stanley J F, Nalabolu, Harika S, Thota, Jyothi, Thorat, Ketaki, Tutaj, Marek A, Tutaj, Monika, Vedi, Mahima, Zacher, Stacy, Smith, Jennifer R, Dwinell, Melinda R, Kwitek, Anne E

“…The COVID-19 pandemic stemmed a parallel upsurge in the scientific literature about SARS-CoV-2 infection and its health burden. The Rat Genome Database (RGD)…”
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The Rat Genome Database: Genetic, Genomic, and Phenotypic Data Across Multiple Species by Laulederkind, Stanley J F, Hayman, G Thomas, Wang, Shur-Jen, Kaldunski, Mary L, Vedi, Mahima, Demos, Wendy M, Tutaj, Monika, Smith, Jennifer R, Lamers, Logan, Gibson, Adam C, Thorat, Ketaki, Thota, Jyothi, Tutaj, Marek A, de Pons, Jeffrey L, Dwinell, Melinda R, Kwitek, Anne E

“…The laboratory rat, Rattus norvegicus, is an important model of human health and disease, and experimental findings in the rat have relevance to human…”
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Updates to the Alliance of Genome Resources central infrastructure by Aleksander, Suzanne A, Anagnostopoulos, Anna V, Antonazzo, Giulia, Arnaboldi, Valerio, Attrill, Helen, Becerra, Andrés, Bello, Susan M, Blodgett, Olin, Bradford, Yvonne M, Bult, Carol J, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Cherry, J Michael, Cho, Jaehyoung, Crosby, Madeline A, De Pons, Jeffrey L, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E, dos Santos, Gilberto, Dyer, Sarah, Ebert, Dustin, Engel, Stacia R, Fashena, David, Fisher, Malcolm, Foley, Saoirse, Gibson, Adam C, Gollapally, Varun R, Gramates, L Sian, Grove, Christian A, Hale, Paul, Harris, Todd, Hayman, G Thomas, Hu, Yanhui, James-Zorn, Christina, Karimi, Kamran, Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E, Laulederkind, Stanley J F, Lee, Raymond, Longden, Ian, Luypaert, Manuel, Markarian, Nicholas, Marygold, Steven J, Matthews, Beverley, McAndrews, Monica S, Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Moxon, Sierra, Muller, Hans-Michael, Mungall, Christopher J, Muruganujan, Anushya, Mushayahama, Tremayne, Nash, Robert S, Nuin, Paulo, Paddock, Holly, Pells, Troy, Perrimon, Norbert, Pich, Christian, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E, Gelbart, Susan Russo, Ruzicka, Leyla, Schindelman, Gary, Shaw, David R, Sherlock, Gavin, Shrivatsav, Ajay, Singer, Amy, Smith, Constance M, Smith, Cynthia L, Smith, Jennifer R, Stein, Lincoln, Sternberg, Paul W, Tabone, Christopher J, Thomas, Paul D, Thorat, Ketaki, Thota, Jyothi, Tomczuk, Monika, Trovisco, Vitor, Tutaj, Marek A, Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E, Vize, Peter D, Wang, Qinghua, Weng, Shuai, Westerfield, Monte, Wilming, Laurens G, Wong, Edith D, Wright, Adam, Yook, Karen, Zhou, Pinglei, Zorn, Aaron

“…The Alliance of Genome Resources (Alliance) is an extensible coalition of knowledgebases focused on the genetics and genomics of intensively studied model…”
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The RGD PhenoMiner Database and Query Tool: A Resource for Quantitative Phenotypes in the Rat by Smith, Jennifer R, De Pons, Jeffrey L, Laulederkind, Stanley J, Hayman, G Thomas, Wang, Shur‐Jen, Hoffman, Matthew J, Zhao, Yiqing, Tutaj, Marek, Ghiasvand, Omid, Dwinell, Melinda R, Shimoyama, Mary E

“…Abstract only Phenotype is defined as any one trait, or any group of traits, which contribute to the physical, biochemical, and physiological makeup of an…”
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Latest reference genome rat strain‐specific variants provide new insight into human diseases by Tutaj, Monika, Smith, Jennifer R, De Pons, Jeffrey L, Laulederkind, Stanley J, Tutaj, Marek A, Hayman, G Thomas, Wang, Shur‐Jen, Petri, Victoria, Dwinell, Melinda R, Shimoyama, Mary E

“…Abstract only Popularization of DNA sequencing technologies and increasing amount of data generated by researchers demand efficient methods to search and…”
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Harmonizing model organism data in the Alliance of Genome Resources by Agapite, Julie, Albou, Laurent-Philippe, Aleksander, Suzanne A., Anagnostopoulos, Anna V., Antonazzo, Giulia, Argasinska, Joanna, Attrill, Helen, Becerra, Andrés, Bello, Susan M., Blake, Judith A., Blodgett, Olin, Bradford, Yvonne M., Bult, Carol J., Cain, Scott, Calvi, Brian R., Carbon, Seth, Chen, Wen J., Cho, Jaehyoung, Christie, Karen R., Crosby, Madeline A., Davis, Paul, da Veiga Beltrame, Eduardo, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E., Douglass, Eric, Dunn, Barbara, Eagle, Anne, Engel, Stacia R., Foley, Saoirse, Frazer, Ken, Gao, Sibyl, Gondwe, Felix, Goodman, Josh, Sian Gramates, L., Grove, Christian A., Hale, Paul, Harris, Todd, Thomas Hayman, G., Hill, David P., Howe, Douglas G., Howe, Kevin L., Hu, Yanhui, Kaufman, Thomas C., Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E., Lee, Raymond, Longden, Ian, Luypaert, Manuel, MacPherson, Kevin A., Martin, Ryan, Marygold, Steven J., Matthews, Beverley, McAndrews, Monica S., Miyasato, Stuart, Motenko, Howie, Muller, Hans-Michael, Mungall, Christopher J., Muruganujan, Anushya, Mushayahama, Tremayne, Nalabolu, Harika S., Nash, Robert S., Ng, Patrick, Paulini, Michael, Perrimon, Norbert, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E., Gelbart, Susan Russo, Ruzicka, Leyla, Schaper, Kevin, Schindelman, Gary, Shimoyama, Mary, Shrivatsav, Ajay, Singer, Amy, Skrzypek, Marek, Smith, Constance M., Smith, Cynthia L., Smith, Jennifer R., Stein, Lincoln, Sternberg, Paul W., Tabone, Christopher J., Thota, Jyothi, Tomczuk, Monika, Tutaj, Marek A., Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E., Wang, Qinghua, Wang, Shur-Jen, Weng, Shuai, Westerfield, Monte, Williams, Gary, Wilming, Laurens G., Wong, Edith D., Yook, Karen, Zarowiecki, Magdalena, Zhou, Pinglei, Zytkovicz, Mark

“…Abstract The Alliance of Genome Resources (the Alliance) is a combined effort of 7 knowledgebase projects: Saccharomyces Genome Database, WormBase, FlyBase,…”
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