Search Results - "Davineni, Phani"

Metaplastic thymoma: a distinctive thymic neoplasm characterized by YAP1-MAML2 gene fusions by Vivero, Marina, Davineni, Phani, Nardi, Valentina, Chan, John K. C., Sholl, Lynette M.

“…Metaplastic thymomas are rare biphasic thymic tumors that are characteristically well-circumscribed, confined to the thymus, and follow a benign to indolent…”
Get full text

Deriving tumor purity from cancer next generation sequencing data: applications for quantitative ERBB2 (HER2) copy number analysis and germline inference of BRCA1 and BRCA2 mutations by Siegmund, Stephanie E., Manning, Danielle K., Davineni, Phani K., Dong, Fei

“…Tumor purity, or the relative contribution of tumor cells out of all cells in a pathological specimen, influences mutation identification and clinical…”
Get full text

Intracranial myxoid mesenchymal tumors with EWSR1–CREB family gene fusions: myxoid variant of angiomatoid fibrous histiocytoma or novel entity? by Bale, Tejus A., Oviedo, Angelica, Kozakewich, Harry, Giannini, Caterina, Davineni, Phani K., Ligon, Keith, Alexandrescu, Sanda

“…Intracranial myxoid mesenchymal tumor harboring EWSR1 fusions with CREB family of genes was recently described, and it resembles the myxoid variant of…”
Get full text

A BRCA1/2 Mutational Signature and Survival in Ovarian High-Grade Serous Carcinoma by Dong, Fei, Davineni, Phani K, Howitt, Brooke E, Beck, Andrew H

“…Mutational signatures have been identified by the broad sequencing of cancer genomes and reflect underlying processes of mutagenesis. The clinical application…”
Get full text

Allelic Complexity of KMT2A Partial Tandem Duplications in Acute Myeloid Leukemia and Myelodysplastic Syndromes by Tsai, Harrison K., Gibson, Christopher J., Murdock, H. Moses, Davineni, Phani, Harris, Marian H., Wang, Eunice S., Gondek, Lukasz P., Kim, Annette S., Nardi, Valentina, Lindsley, R. Coleman

“…KMT2A partial tandem duplication (KMT2A-PTD) is an adverse risk factor in AML and MDS, a potential therapeutic target, and an attractive marker of measurable…”
Get full text

Response to “Expanding the Clinicopathologic Spectrum of YAP1-MAML2–Rearranged Thymic Neoplasm” by Vivero, Marina, Davineni, Phani, Nardi, Valentina, Chan, John K.C., Sholl, Lynette M.

Get full text

Institutional implementation of clinical tumor profiling on an unselected cancer population by Sholl, Lynette M, Do, Khanh, Shivdasani, Priyanka, Cerami, Ethan, Dubuc, Adrian M, Kuo, Frank C, Garcia, Elizabeth P, Jia, Yonghui, Davineni, Phani, Abo, Ryan P, Pugh, Trevor J, van Hummelen, Paul, Thorner, Aaron R, Ducar, Matthew, Berger, Alice H, Nishino, Mizuki, Janeway, Katherine A, Church, Alanna, Harris, Marian, Ritterhouse, Lauren L, Campbell, Joshua D, Rojas-Rudilla, Vanesa, Ligon, Azra H, Ramkissoon, Shakti, Cleary, James M, Matulonis, Ursula, Oxnard, Geoffrey R, Chao, Richard, Tassell, Vanessa, Christensen, James, Hahn, William C, Kantoff, Philip W, Kwiatkowski, David J, Johnson, Bruce E, Meyerson, Matthew, Garraway, Levi A, Shapiro, Geoffrey I, Rollins, Barrett J, Lindeman, Neal I, MacConaill, Laura E

“…Comprehensive genomic profiling of a patient's cancer can be used to diagnose, monitor, and recommend treatment. Clinical implementation of tumor profiling in…”
Get full text

Targeted Informatics for Optimal Detection, Characterization, and Quantification of FLT3 Internal Tandem Duplications Across Multiple Next-Generation Sequencing Platforms by Tsai, Harrison K., Brackett, Diane G., Szeto, David, Frazier, Ryan, MacLeay, Allison, Davineni, Phani, Manning, Danielle K., Garcia, Elizabeth, Lindeman, Neal I., Le, Long P., Lennerz, Jochen K., Gibson, Christopher J., Lindsley, R. Coleman, Kim, Annette S., Nardi, Valentina

“…Assessment of internal tandem duplications in FLT3 (FLT3-ITDs) and their allelic ratio (AR) is recommended by clinical guidelines for diagnostic workup of…”
Get full text

Abstract 562: Oncovirus detection and integration analysis from human tumor samples using targeted massively parallel sequencing by Burns, Robert T., Hunter, Samuel S., Ducar, Matthew D., Thorner, Aaron R., Decaprio, James A., Hummelen, Paul Van, Frieden, Alexander, Nag, Anwesha, Coleman, Haley A., Slevin, Michael K., Clapp, Andrea, Drinan, Samantha D., McShane, Suzanne R., Thai, Edwin, Shivdasani, Priyanka, Bohannon, Joshua, Hoeftberger, Johann, Jacobs, Reuben, Wollison, Bruce M., Patel, Neil A., Manam, Monica D., Davineni, Phani, Meyerson, Matthew, MacConaill, Laura E.

“…Viruses are a major contributor to oncogenesis, causing 10-15% of human cancers. Molecular pathways involved in malignant transformation are frequently…”
Get full text

Abstract 4257: Reducing GC bias and increasing complexity: Clinical implementation and validation of KAPA library preparation protocol for Oncopanel, a targeted next generation sequencing panel by Jia, Yonghui, Manning, Allison D., Joshi, Ruchi A., Fendler, Bernard J., Shivdasani, Priyanka, Chung, Lawrence P., Davineni, Phani K., Gong, Xin, Ducar, Matthew D., Sholl, Lynette M., Lindeman, Neal I., Macconaill, Laura E., Garcia, Elizabeth P.

“…The recent understanding of cancer as a genomic disease, coupled with the advent of targeted therapeutic agents that more specifically and effectively treat a…”
Get full text

Abstract 3890: Sequencing of 888 pediatric solid tumors informs precision oncology trial design and data sharing initiatives in pediatric cancer by Forrest, Suzanne J., Gupta, Hersh, Ward, Abigail, Li, Yvonne, Doan, Duong, Al-Ibraheemi, Alyaa, Alexandrescu, Sanda, Bandopadhayay, Pratiti, Shusterman, Suzanne, Mullen, Elizabeth A., Collins, Natalie, Chi, Susan N., Wright, Karen D., Kumari, Priti, Mazor, Tali, Ligon, Keith L., Shivdasani, Priyanka, Davineni, Phani, Manam, Monica, Schilsky, Richard L., Bruinooge, Suanna S., Auvil, Jaime M. Guidry, Cerami, Ethan, Rollins, Barrett J., Meyerson, Matthew L., Lindeman, Neal I., MacConaill, Laura, Johnson, Bruce E., Cherniack, Andrew D., Church, Alanna J., Janeway, Katherine A.

“…Pediatric pan-cancer genome analyses do not capture the full range of diagnoses encountered in clinical practice. To inform basket trial design and real-world…”
Get full text

Abstract 2991: Detection of gene rearrangements using OncoPanel: a targeted next-generation sequencing assay by Garcia, Elizabeth P., Ligon, Azra H., Abo, Ryan P., Dal Cin, Paola S., Weremowicz, Stanislawa, Shivdasani, Priyanka, Davineni, Phani K., Zepf, Dimity L., Ducar, Matthew D., Van Hummelen, Paul, Jia, Yonghui, Kuo, Frank C., Sholl, Lynette M., MacConaill, Laura E., Lindeman, Neal I.

“…Identification of structural gene rearrangements is vital for cancer patients as these events can provide definitive diagnoses, prognostic value, and influence…”
Get full text