Search Results - "Davenport, Kimberly M."

Single-Cell Sequencing Technology in Ruminant Livestock: Challenges and Opportunities by Lyons, Avery, Brown, Jocelynn, Davenport, Kimberly M

“…Advancements in single-cell sequencing have transformed the genomics field by allowing researchers to delve into the intricate cellular heterogeneity within…”
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Telomere-to-telomere assemblies of cattle and sheep Y-chromosomes uncover divergent structure and gene content by Olagunju, Temitayo A., Rosen, Benjamin D., Neibergs, Holly L., Becker, Gabrielle M., Davenport, Kimberly M., Elsik, Christine G., Hadfield, Tracy S., Koren, Sergey, Kuhn, Kristen L., Rhie, Arang, Shira, Katie A., Skibiel, Amy L., Stegemiller, Morgan R., Thorne, Jacob W., Villamediana, Patricia, Cockett, Noelle E., Murdoch, Brenda M., Smith, Timothy P. L.

“…Reference genomes of cattle and sheep have lacked contiguous assemblies of the sex-determining Y chromosome. Here, we assemble complete and gapless telomere to…”
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A high-density genome-wide association with absolute blood monocyte count in domestic sheep identifies novel loci by Oliveira, Ryan D, Mousel, Michelle R, Gonzalez, Michael V, Durfee, Codie J, Davenport, Kimberly M, Murdoch, Brenda M, Taylor, J Bret, Neibergs, Holly L, White, Stephen N

“…Monocytes are a core component of the immune system that arise from bone marrow and differentiate into cells responsible for phagocytosis and antigen…”
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Estrogen receptor alpha regulates uterine epithelial lineage specification and homeostasis by Rizo, Jason A., Davenport, Kimberly M., Winuthayanon, Wipawee, Spencer, Thomas E., Kelleher, Andrew M.

“…Postnatal development of the uterus involves specification of undifferentiated epithelium into uterine-type epithelium. That specification is regulated by…”
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Characterizing Genetic Regulatory Elements in Ovine Tissues by Davenport, Kimberly M, Massa, Alisha T, Bhattarai, Suraj, McKay, Stephanie D, Mousel, Michelle R, Herndon, Maria K, White, Stephen N, Cockett, Noelle E, Smith, Timothy P L, Murdoch, Brenda M

“…The Ovine Functional Annotation of Animal Genomes (FAANG) project, part of the broader livestock species FAANG initiative, aims to identify and characterize…”
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Disruption of CSF2RA in the bovine preimplantation embryo reduces development and affects embryonic gene expression in utero by Sosa, Froylan, Uh, Kyungjun, Drum, Jessica N, Stoecklein, Katy S, Davenport, Kimberly M, Ortega, M Sofia, Lee, Kiho, Hansen, Peter J

“…The hypothesis that CSF2 plays a role in the preimplantation development of the bovine embryo was tested by evaluating consequences of inactivation of CSF2RA…”
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Single-cell insights into epithelial morphogenesis in the neonatal mouse uterus by Spencer, Thomas E, Lowke, Makenzie T, Davenport, Kimberly M, Dhakal, Pramod, Kelleher, Andrew M

“…The uterus is vital for successful reproduction in mammals, and two different types of epithelia (luminal and glandular) are essential for embryo implantation…”
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Single-nuclei RNA sequencing (snRNA-seq) uncovers trophoblast cell types and lineages in the mature bovine placenta by Davenport, Kimberly M, Ortega, M Sofia, Liu, Hongyu, O'Neil, Eleanore V, Kelleher, Andrew M, Warren, Wesley C, Spencer, Thomas E

“…Ruminants have a semi-invasive placenta, which possess highly vascularized placentomes formed by maternal endometrial caruncles and fetal placental cotyledons…”
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Single-cell insights into development of the bovine placenta by Davenport, Kimberly M., O'Neil, Eleanore V., Ortega, M. Sofia, Patterson, Amanda, Kelleher, Andrew M., Warren, Wesley C., Spencer, Thomas E.

“…A central determinant of pregnancy success is proper development of the conceptus (embryo/fetus and associated extraembryonic membranes including the…”
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An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome by Davenport, Kimberly M, Bickhart, Derek M, Worley, Kim, Murali, Shwetha C, Salavati, Mazdak, Clark, Emily L, Cockett, Noelle E, Heaton, Michael P, Smith, Timothy P L, Murdoch, Brenda M, Rosen, Benjamin D

“…Abstract Background The domestic sheep (Ovis aries) is an important agricultural species raised for meat, wool, and milk across the world. A high-quality…”
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A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus by Heaton, Michael P, Smith, Timothy P L, Bickhart, Derek M, Vander Ley, Brian L, Kuehn, Larry A, Oppenheimer, Jonas, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Rosen, Benjamin D

“…Abstract Genomics research has relied principally on the establishment and curation of a reference genome for the species. However, it is increasingly…”
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Identifying Regions of the Genome Associated with Conception Rate to the First Service in Holstein Heifers Bred by Artificial Insemination and as Embryo Transfer Recipients by Kelson, Victoria C, Kiser, Jennifer N, Davenport, Kimberly M, Suarez, Emaly M, Murdoch, Brenda M, Neibergs, Holly L

“…Heifer conception rate to the first service (HCR1) is defined as the number of heifers that become pregnant to the first breeding service compared to the…”
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A Reference Genome Assembly of American Bison, Bison bison bison by Oppenheimer, Jonas, Rosen, Benjamin D, Heaton, Michael P, Vander Ley, Brian L, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, Kuehn, Larry A, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Bickhart, Derek M, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Smith, Timothy P L

“…Abstract Bison are an icon of the American West and an ecologically, commercially, and culturally important species. Despite numbering in the hundreds of…”
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Genomic regions associated with embryonic loss in primiparous Holstein cows by Kelson, Victoria C., Kiser, Jennifer N., Davenport, Kimberly M., Suarez, Emaly M., Murdoch, Brenda M., Neibergs, Holly L.

“…Introduction Reproductive efficiency in dairy cattle bred by artificial insemination (AI) or via embryo transfer (ET) is important as a means of facilitating…”
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Advanced Skeletal Ossification Is Associated with Genetic Variants in Chronologically Young Beef Heifers by Shira, Katie A, Murdoch, Brenda M, Davenport, Kimberly M, Becker, Gabrielle M, Xie, Shangqian, Colacchio, Antonetta M, Bass, Phillip D, Colle, Michael J, Murdoch, Gordon K

“…Osteogenesis is a developmental process critical for structural support and the establishment of a dynamic reservoir for calcium and phosphorus. Changes in…”
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Genome-Wide Association Analyses of Fertility Traits in Beef Heifers by Stegemiller, Morgan R, Murdoch, Gordon K, Rowan, Troy N, Davenport, Kimberly M, Becker, Gabrielle M, Hall, John B, Murdoch, Brenda M

“…The ability of livestock to reproduce efficiently is critical to the sustainability of animal agriculture. Antral follicle count (AFC) and reproductive tract…”
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Variation in type two taste receptor genes is associated with bitter tasting phenylthiocarbamide consumption in mature Targhee and Rambouillet rams by Davenport, Kimberly M, Taylor, J Bret, Henslee, Dillan, Southerland, Claire, Yelich, Joel, Ellison, Melinda J, Murdoch, Brenda M

“…Abstract Bitter taste perception in sheep can lead to avoidance of specific types of forage, such as sagebrush, which is present on many rangeland grazing…”
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Complete Mitochondrial Genome Sequence of Bighorn Sheep by Davenport, Kimberly M, Duan, Mingrui, Hunter, Samuel S, New, Daniel D, Fagnan, Matthew W, Highland, Margaret A, Murdoch, Brenda M

“…We report here the complete mitochondrial genome sequence of a Rocky Mountain bighorn sheep ( ) in the United States. The circular genome has a size of 16,466…”
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Genomic testing of female Holsteins: a resource for selection and improvement by Davenport, Kimberly M, Spencer, Jennifer A, Peak, Joshua J, Dalton, Joseph C, Murdoch, Brenda M

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PSII-27 Determining genetic variation in sheep with Flock54: a genotyping by sequencing panel by Thorne, Jacob W, Eidman, Lesa, Duan, Mingrui, Hunter, Samuel S, Davenport, Kimberly M, Murdoch, Brenda

“…Abstract Genetic selection can accelerate progress of the United States sheep industry, yet it is underutilized by the seedstock sector. Poor reproductive and…”
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